Miyakogusa Predicted Gene

Lj3g3v0563910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0563910.1 tr|F4HRS2|F4HRS2_ARATH HEAT repeat-containing
protein OS=Arabidopsis thaliana GN=SWEETIE PE=4 SV=1,68.84,0,no
description,Armadillo-like helical; HYPOTHETICAL HEAT
DOMAIN-CONTAINING,NULL; seg,NULL; ARM repea,CUFF.40994.1
         (551 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g53540.1                                                       645   0.0  

>Glyma18g53540.1 
          Length = 1898

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/373 (87%), Positives = 336/373 (90%), Gaps = 6/373 (1%)

Query: 1   MLLLFGIIFASQDSGGMLSLVGIIEQCLKAGKKQHWRSASITNICVGLLAGFKALLSFRA 60
           MLL FGIIFASQDSGGMLSL+GIIEQCLKAGKKQHW  AS+TNICVGLLAGFKALLSFR 
Sbjct: 234 MLLFFGIIFASQDSGGMLSLLGIIEQCLKAGKKQHWHKASLTNICVGLLAGFKALLSFRP 293

Query: 61  QTLGQEILGLIQSIFQSILAEGDICASQRRASSEGLGYLARFGNDIFTARM------TRS 114
           QTLGQEILGL QSIF  ILAEGDICASQRRASSE LGYLARFGNDIFTARM      TRS
Sbjct: 294 QTLGQEILGLAQSIFLGILAEGDICASQRRASSESLGYLARFGNDIFTARMACSFNLTRS 353

Query: 115 LLGDLNGATDSYFAGSIALALGCIHRSAGGIALSTLVPATXXXXXXXXXXXXXNLQSWSM 174
           LLGDLNGATD  +AGSIALALGCIHRSAGGIALSTLVPAT             NLQ WSM
Sbjct: 354 LLGDLNGATDPNYAGSIALALGCIHRSAGGIALSTLVPATVSSISSLAKSSVANLQIWSM 413

Query: 175 HGLLLTIEAAGLSFVSHVQATLSLAMDILLSDENGLVDVHQGVGRLINAIVTVLGPELVP 234
           HGLLLTIEAAGLSFVSHVQATLSLAMDILLSDENGLVD+ QGVGRLINAIVTVLGPEL P
Sbjct: 414 HGLLLTIEAAGLSFVSHVQATLSLAMDILLSDENGLVDIQQGVGRLINAIVTVLGPELAP 473

Query: 235 GSIFFSRSKSAIAEISCWQETSTLLESARFTQQLVLFAPLAVSVHSHVQTLLSTLSSRQP 294
           GSIFFSRSKSAIAEIS WQETST+LESARFTQQLVLFAP AVSVHSHVQTLLSTLSSRQP
Sbjct: 474 GSIFFSRSKSAIAEISSWQETSTMLESARFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQP 533

Query: 295 NLRHLAVSTLRHLIEKDPASVIVEQIEDNLFFMLDEETDSEIGNLVQSTIMRLLYASCPS 354
            LRHLAVSTLRHLIEKDPASV+VEQIEDNLFFMLDEETDSEIGNLV++TIMRLL ASC S
Sbjct: 534 TLRHLAVSTLRHLIEKDPASVMVEQIEDNLFFMLDEETDSEIGNLVRTTIMRLLCASCSS 593

Query: 355 CPSHWISVCRKVV 367
           CPSHWISVCRKVV
Sbjct: 594 CPSHWISVCRKVV 606



 Score =  197 bits (501), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/140 (70%), Positives = 111/140 (79%), Gaps = 3/140 (2%)

Query: 367  VLATSMRXXXXXXXXXXXXX---SRLNLGDEDNMVSGSNSSQIYQFQASIAAANREKFLR 423
            VLATS+R                SRLN  D++NMV GSNS Q ++FQASI   NREK+LR
Sbjct: 1754 VLATSLRNTENNNIAANDNPDGDSRLNHEDDENMVPGSNSGQSHKFQASIGTTNREKYLR 1813

Query: 424  YRTRLFAAECLSHLPDAVGRNPAHFDLLMARKENASGRASSDWLVLHLQELISLAYQIST 483
            Y+TRLFAAECLSHLPDAVG +PAHFDL +ARKE ASG+A+ DWLVLHLQELISLAYQIST
Sbjct: 1814 YKTRLFAAECLSHLPDAVGSHPAHFDLFLARKELASGQATGDWLVLHLQELISLAYQIST 1873

Query: 484  IQFESMQPVGVSLLGTIVDK 503
            IQFE+MQPVGVSLLG IVDK
Sbjct: 1874 IQFETMQPVGVSLLGIIVDK 1893