Miyakogusa Predicted Gene

Lj3g3v0563900.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0563900.1 tr|H2KW91|H2KW91_ORYSJ RWD domain containing
protein, expressed OS=Oryza sativa subsp. japonica
GN=L,62.5,1e-16,Ring finger,Zinc finger, RING-type; zf-RING_2,Zinc
finger, RING-type; ZF_RING_2,Zinc finger, RING-ty,CUFF.40965.1
         (312 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g26160.1                                                       295   4e-80

>Glyma03g26160.1 
          Length = 366

 Score =  295 bits (755), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 156/232 (67%), Positives = 179/232 (77%), Gaps = 3/232 (1%)

Query: 1   MNHPDGDCPLCLFPLVPDDRQSETLPFMKLMSCFHCFHSECIGRWWNWLQISKQTGSSSS 60
           MNHPDGDCPLCLFPLVP+D++S TLPFMKLMSCFHCFHSECI RWW WLQ S +  SS++
Sbjct: 118 MNHPDGDCPLCLFPLVPEDQESGTLPFMKLMSCFHCFHSECIIRWWKWLQNSNKVDSSNT 177

Query: 61  DTATARPNKDSYKKLDDGVGNCPVCRKPFHAKDLDHVLDLVGSHPSQSXXXXXXXXXXEE 120
           D+A A  N+D+ KK ++ VGNCPVCRKPF AKDLDHVL LVGS+ SQ           EE
Sbjct: 178 DSAAAHRNQDNPKKTEESVGNCPVCRKPFLAKDLDHVLALVGSYSSQ-LSSDNEELNEEE 236

Query: 121 KLLQSEYEIIRRQKFEAILNIQKEKSGLIEPKIDLVITPGMYLPQPVAAPSSTSTKESDE 180
           KLLQSE EI RRQK+EAILN+QKE SGLIEPK ++VI PGMYLPQPVA PSST TKESDE
Sbjct: 237 KLLQSEDEINRRQKYEAILNLQKENSGLIEPKKEMVILPGMYLPQPVAMPSSTPTKESDE 296

Query: 181 QQERDPPAVVSGRHDSGTSNRPSSSG--NMNYDARRQRGRSYHNSSSTIRQP 230
            Q++DPPAVV  +H  GTSN    S     N+ ARRQ+ RS ++SSST R P
Sbjct: 297 PQQKDPPAVVPEKHAGGTSNSSIPSSSRQRNFGARRQKARSDNHSSSTARNP 348



 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 229 QPVAAPSSASTKESDDRQERDPPAVV--XXXXXXXXXXXXXXXXXXXXXXXXXXARSYHN 286
           QPVA PSS  TKESD+ Q++DPPAVV                            ARS ++
Sbjct: 281 QPVAMPSSTPTKESDEPQQKDPPAVVPEKHAGGTSNSSIPSSSRQRNFGARRQKARSDNH 340

Query: 287 SSSTVRHPPRKPVQQWAMRDNTSSK 311
           SSST R+P +   QQW  RDN S+K
Sbjct: 341 SSSTARNPRKPAQQQWVRRDNPSNK 365