Miyakogusa Predicted Gene
- Lj3g3v0563900.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0563900.1 tr|H2KW91|H2KW91_ORYSJ RWD domain containing
protein, expressed OS=Oryza sativa subsp. japonica
GN=L,62.5,1e-16,Ring finger,Zinc finger, RING-type; zf-RING_2,Zinc
finger, RING-type; ZF_RING_2,Zinc finger, RING-ty,CUFF.40965.1
(312 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma03g26160.1 295 4e-80
>Glyma03g26160.1
Length = 366
Score = 295 bits (755), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 156/232 (67%), Positives = 179/232 (77%), Gaps = 3/232 (1%)
Query: 1 MNHPDGDCPLCLFPLVPDDRQSETLPFMKLMSCFHCFHSECIGRWWNWLQISKQTGSSSS 60
MNHPDGDCPLCLFPLVP+D++S TLPFMKLMSCFHCFHSECI RWW WLQ S + SS++
Sbjct: 118 MNHPDGDCPLCLFPLVPEDQESGTLPFMKLMSCFHCFHSECIIRWWKWLQNSNKVDSSNT 177
Query: 61 DTATARPNKDSYKKLDDGVGNCPVCRKPFHAKDLDHVLDLVGSHPSQSXXXXXXXXXXEE 120
D+A A N+D+ KK ++ VGNCPVCRKPF AKDLDHVL LVGS+ SQ EE
Sbjct: 178 DSAAAHRNQDNPKKTEESVGNCPVCRKPFLAKDLDHVLALVGSYSSQ-LSSDNEELNEEE 236
Query: 121 KLLQSEYEIIRRQKFEAILNIQKEKSGLIEPKIDLVITPGMYLPQPVAAPSSTSTKESDE 180
KLLQSE EI RRQK+EAILN+QKE SGLIEPK ++VI PGMYLPQPVA PSST TKESDE
Sbjct: 237 KLLQSEDEINRRQKYEAILNLQKENSGLIEPKKEMVILPGMYLPQPVAMPSSTPTKESDE 296
Query: 181 QQERDPPAVVSGRHDSGTSNRPSSSG--NMNYDARRQRGRSYHNSSSTIRQP 230
Q++DPPAVV +H GTSN S N+ ARRQ+ RS ++SSST R P
Sbjct: 297 PQQKDPPAVVPEKHAGGTSNSSIPSSSRQRNFGARRQKARSDNHSSSTARNP 348
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 229 QPVAAPSSASTKESDDRQERDPPAVV--XXXXXXXXXXXXXXXXXXXXXXXXXXARSYHN 286
QPVA PSS TKESD+ Q++DPPAVV ARS ++
Sbjct: 281 QPVAMPSSTPTKESDEPQQKDPPAVVPEKHAGGTSNSSIPSSSRQRNFGARRQKARSDNH 340
Query: 287 SSSTVRHPPRKPVQQWAMRDNTSSK 311
SSST R+P + QQW RDN S+K
Sbjct: 341 SSSTARNPRKPAQQQWVRRDNPSNK 365