Miyakogusa Predicted Gene

Lj3g3v0478140.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0478140.1 Non Chatacterized Hit- tr|J3MFT7|J3MFT7_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB06G2,36.41,8e-16,SAE2,DNA repair protein Sae2/CtIP; seg,NULL;
coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; RETINOBLAST,CUFF.40885.1
         (606 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g36730.1                                                       421   e-118
Glyma13g27420.1                                                       303   5e-82

>Glyma12g36730.1 
          Length = 469

 Score =  421 bits (1083), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 248/472 (52%), Positives = 294/472 (62%), Gaps = 83/472 (17%)

Query: 13  HRNPPKLGFPLPPAAAGDEKLISGLSTILVASIQEARDRISQIEYVFCSQIYPHFQSTSK 72
           H + PKLGFPLP +AAGD  L++ LSTILVASIQ+A+DRISQIEYVFCSQ+YPH +S   
Sbjct: 12  HPHSPKLGFPLP-SAAGDANLLTALSTILVASIQDAKDRISQIEYVFCSQLYPHLKSDDA 70

Query: 73  HSDSKRRRIEELEREVDEGMALHKTLTELVRSKELSLRASEEKRKSAVAKLERCESETAS 132
              SKR  IE+L+R+ DE   L              L  +EE+R +A  K E CE + A+
Sbjct: 71  ---SKRCCIEQLKRDADENAKL--------------LLHAEERRNAAFLKSESCEGDKAT 113

Query: 133 LLGRIDXXXXXXXXXXXXXXXXXXXXVESEGSYRNLVENVESMSCELQAEKLKRNRLTEA 192
           LL RI                     +E EG    L+E VE+++CEL+ EK KRNR+TEA
Sbjct: 114 LLARIAELDETLRLKTREIEEAETKRIEEEG---KLLERVEALACELRDEKAKRNRVTEA 170

Query: 193 YKRLKSQHVYLRQKVGLTEENMLSRSKLPPGSD--KHQSPVTEPGLAFEDPDITMGACKA 250
           YKRLKSQHVYLR+KVGL EEN++   KL  G++   HQSPV EPGLAFE+P++TM A  +
Sbjct: 171 YKRLKSQHVYLRRKVGLGEENVVQEKKLESGTELGVHQSPVVEPGLAFENPNMTMDAGDS 230

Query: 251 TDME--SEIPEDDFGGLENATPDVFVSVRNANEVKEKTLGDDRGANLIPPSSSFYVRPKC 308
              E  +EIPE+DFGGLE  TPDVFV+  + + VKEK    DRG NL  PSS F   PKC
Sbjct: 231 DTAEGRNEIPEEDFGGLETQTPDVFVAACDISRVKEKPSEIDRGWNLSSPSSGFRDVPKC 290

Query: 309 PSSDHPLAISAGLENTTPDVFVSVRDANEVKEKTLEDDRGGKLIPPSSSFYVRPKCPSSA 368
           PSS                                      KL+  SS            
Sbjct: 291 PSS-------------------------------------TKLVSASS------------ 301

Query: 369 KVASVSGTKRPAPSWRLTRSHQSRAGPDPHDDFLDTPLENIRVNLNKDLNKADLPCPIQK 428
                  TKRPA SWR TRSHQSRAGPDPHDDFLDTPLENIR N NKDLNK D PC IQK
Sbjct: 302 -------TKRPASSWRQTRSHQSRAGPDPHDDFLDTPLENIRENFNKDLNKEDQPCLIQK 354

Query: 429 DISMNSSDDETQDLNAESSPQK--KQSSITVADKRSFKYIEPVMKKAELEHL 478
           DIS++SSDDETQD+NA+SSPQK  KQSS+TVA+ RSFKY+EPV KKAE E+L
Sbjct: 355 DISVDSSDDETQDMNAKSSPQKKQKQSSVTVANTRSFKYVEPVRKKAERENL 406



 Score =  231 bits (588), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/134 (83%), Positives = 120/134 (89%), Gaps = 4/134 (2%)

Query: 476 EHLNKDL-KPGLPCPIQRDKCMDSSDDETQDLNAKSSPQKKQ--SSITVADKKSFKYIEP 532
           E+ NKDL K   PC IQ+D  +DSSDDETQD+NAKSSPQKKQ  SS+TVA+ +SFKY+EP
Sbjct: 337 ENFNKDLNKEDQPCLIQKDISVDSSDDETQDMNAKSSPQKKQKQSSVTVANTRSFKYVEP 396

Query: 533 VRKKAERENLKGVECKQCRKFYDAVLPNADGKDPDNSKQNFRCEHLDGVSRHRYRYVPPM 592
           VRKKAERENLKGVECKQCRKFYDAVLPNA GKD D SKQNFRCEHLDGVSRHRYRYVPPM
Sbjct: 397 VRKKAERENLKGVECKQCRKFYDAVLPNAAGKDTD-SKQNFRCEHLDGVSRHRYRYVPPM 455

Query: 593 TPEGFWNIGFESEM 606
           TPEGFWNIGFESEM
Sbjct: 456 TPEGFWNIGFESEM 469


>Glyma13g27420.1 
          Length = 416

 Score =  303 bits (775), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 186/378 (49%), Positives = 223/378 (58%), Gaps = 52/378 (13%)

Query: 115 KRKSAVAKLERCESETASLLGRIDXXXXXXXXXXXXXXXXXXXXVESEGSYRNLVENVES 174
           KR +A +KLE CE E A+LL RID                     E E +   L+E VE+
Sbjct: 19  KRNAAFSKLESCEGEKATLLARIDELDEKLRLKTR----------EIEEADGKLLERVEA 68

Query: 175 MSCELQAEKLKRNRLTEAYKRLKSQHVYLRQKVGLTEENMLSRSKLPPGSDKH--QSPVT 232
           ++CEL+ EKLKRNR+TEAYKRLKSQHVYLR+KVGL EEN++  +KL   S+    QSP+ 
Sbjct: 69  LTCELRDEKLKRNRVTEAYKRLKSQHVYLRRKVGLGEENVVQENKLECASELEMLQSPIV 128

Query: 233 EPGLAFEDPDITMGACKATDMESEIPEDDFGGLENATPDVFVSVRNANEVKEKTLGDDRG 292
           +PG+      IT  + K   +   +    F    N     + S  +  EV+ +   +D G
Sbjct: 129 KPGI------ITSLSYKLIIVCHWLRLHLFSLFINYLLACYCSDSDTAEVRNQIPEEDFG 182

Query: 293 ANLIPPSSSFYVRPKCPSSDHPLAISAGLENTTPDVFVSVRDANEVKEKTLEDDRGGKLI 352
                                      GLE  TPDVFV+      VKEK  E DRG  L 
Sbjct: 183 ---------------------------GLETKTPDVFVATCVIKRVKEKPSEIDRGCNLS 215

Query: 353 PPSSSFYVRPKCPSSAKVASVSGTKRPAPSWRLTRSHQSRAGPDPHDDFLDTPLENIRVN 412
            PSS F   PKCPS+ K+ SVS TKRP  SWR TRSHQSR GPDPHDDFLDT LENIR N
Sbjct: 216 SPSSGFRDVPKCPSNTKLVSVSSTKRPVSSWRQTRSHQSRVGPDPHDDFLDTSLENIREN 275

Query: 413 LNKDLNKADLPCPIQKDISMNSSDDETQDLNAESSPQK--KQSSITVADKRSFKYIEPVM 470
           LNKDLNK D PC IQKDIS +SSDDET D+NA+SSPQK  KQSS+TVA+ RSFKY+EPV 
Sbjct: 276 LNKDLNKEDQPCLIQKDISADSSDDETHDMNAKSSPQKKQKQSSVTVANTRSFKYVEPVR 335

Query: 471 KKAELEHLNKDLKPGLPC 488
           KKAE E+L      G+ C
Sbjct: 336 KKAERENLK-----GVEC 348



 Score =  183 bits (464), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 93/115 (80%), Positives = 101/115 (87%), Gaps = 4/115 (3%)

Query: 476 EHLNKDL-KPGLPCPIQRDKCMDSSDDETQDLNAKSSPQKKQ--SSITVADKKSFKYIEP 532
           E+LNKDL K   PC IQ+D   DSSDDET D+NAKSSPQKKQ  SS+TVA+ +SFKY+EP
Sbjct: 274 ENLNKDLNKEDQPCLIQKDISADSSDDETHDMNAKSSPQKKQKQSSVTVANTRSFKYVEP 333

Query: 533 VRKKAERENLKGVECKQCRKFYDAVLPNADGKDPDNSKQNFRCEHLDGVSRHRYR 587
           VRKKAERENLKGVECKQCRKFYDAVLPNADGKD D SKQ+FRCEHLDGVSRHRYR
Sbjct: 334 VRKKAERENLKGVECKQCRKFYDAVLPNADGKDAD-SKQSFRCEHLDGVSRHRYR 387