Miyakogusa Predicted Gene

Lj3g3v0429140.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0429140.1 tr|D8U6K0|D8U6K0_VOLCA Plastid/chloroplast
ribosomal protein S20 OS=Volvox carteri GN=prpS20 PE=3
SV,47.2,2e-19,no description,Ribosomal protein S20;
Ribosomal_S20p,Ribosomal protein S20; Ribosomal_S20,Ribosomal
,CUFF.40751.1
         (177 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g35690.1                                                       239   8e-64
Glyma12g26520.1                                                       239   1e-63

>Glyma06g35690.1 
          Length = 179

 Score =  239 bits (611), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 126/178 (70%), Positives = 137/178 (76%), Gaps = 3/178 (1%)

Query: 2   AAVSCSWLTLPSKFRDXXXXXXXXXXXXXXXXXX-FCRNISHTVFSQGS-LSLSPVQRRT 59
           A+VSCSWLTLPS+ R                    F RN+SH +FSQG+ LSLS VQRR 
Sbjct: 3   ASVSCSWLTLPSQMRKLSLTSSSSSLSISNSASLSFSRNLSHPLFSQGNCLSLSTVQRRA 62

Query: 60  LVVCEVVTKKKVDSAIKRARQAEKRRIYNKARKSEIKTRMKKVLEALESLKKKSDAQPEE 119
            VVCE   KK VDSA+KRARQAEKRR+YNKARKSEIKTR KKVLEALE LKKK DAQ EE
Sbjct: 63  SVVCEAAPKK-VDSAVKRARQAEKRRVYNKARKSEIKTRTKKVLEALEVLKKKQDAQAEE 121

Query: 120 ILPIEKLIGEAYSVIDKAIRVGTLHRNTGGHRKSRLARRKKVVEIHHGWYTPVSDGSV 177
           IL IEKLIGEAYS+IDKA+RVGTLHRNTG +RKSRLARRKK VEIHHGWYTP  + SV
Sbjct: 122 ILSIEKLIGEAYSIIDKAVRVGTLHRNTGANRKSRLARRKKAVEIHHGWYTPTPEASV 179


>Glyma12g26520.1 
          Length = 180

 Score =  239 bits (609), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 125/178 (70%), Positives = 135/178 (75%), Gaps = 2/178 (1%)

Query: 2   AAVSCSWLTLPSKFRDXXXXXXXXXXXXXXXXX-XFCRNISHTVFSQG-SLSLSPVQRRT 59
           A+VSCSWLTLPS+ R                    F RN+S   FS+G SLSLS V RR 
Sbjct: 3   ASVSCSWLTLPSQMRSLSLTSSSSSLCISNSASLSFSRNLSRPFFSKGNSLSLSTVLRRA 62

Query: 60  LVVCEVVTKKKVDSAIKRARQAEKRRIYNKARKSEIKTRMKKVLEALESLKKKSDAQPEE 119
            VVCE   KKKVDSA+KRARQAEK R+YNKARKSEIKTR KKVLEALE LKKKSDAQ EE
Sbjct: 63  SVVCEAAPKKKVDSAVKRARQAEKHRVYNKARKSEIKTRTKKVLEALEVLKKKSDAQAEE 122

Query: 120 ILPIEKLIGEAYSVIDKAIRVGTLHRNTGGHRKSRLARRKKVVEIHHGWYTPVSDGSV 177
           ILPIEKLIGEAYS+IDKA+RVGTLHRNTG +RKSRLARRKK VEIHHGWYTP  +  V
Sbjct: 123 ILPIEKLIGEAYSIIDKAVRVGTLHRNTGANRKSRLARRKKAVEIHHGWYTPAPEAIV 180