Miyakogusa Predicted Gene

Lj3g3v0420640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0420640.1 Non Chatacterized Hit- tr|G7I8Y6|G7I8Y6_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,48.76,0.00000000005,seg,NULL,
NODE_67318_length_710_cov_28.715492.path2.1
         (208 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g05590.1                                                        57   2e-08
Glyma06g05610.1                                                        55   7e-08
Glyma17g33450.1                                                        50   2e-06

>Glyma04g05590.1 
          Length = 166

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 2/50 (4%)

Query: 30 KSIFSCIFQVVFMGLALLATVTSEDNKVEAPSTSSSLWCITECGTCPLIC 79
          K +FS I +  FMGLAL ATVTS + KVE P  SS L+CI++C  CP+IC
Sbjct: 8  KILFSWILKACFMGLALFATVTSSEEKVEDP--SSGLFCISDCAKCPVIC 55


>Glyma06g05610.1 
          Length = 167

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 2/65 (3%)

Query: 14 TSVQMGSDSKSLRSIKKSIFSCIFQVVFMGLALLATVTSEDNKVEAPSTSSSLWCITECG 73
          T V + S S++     KS+F  I +  FMGL L ATVTS + K E P  SS L+CI++C 
Sbjct: 22 TKVALVSTSQNSLLFIKSLFLWILKAWFMGLVLFATVTSSEYKAEDP--SSGLFCISDCA 79

Query: 74 TCPLI 78
          TCP+I
Sbjct: 80 TCPVI 84


>Glyma17g33450.1 
          Length = 263

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 4  IPSWFLQAPPTSVQMGSDSKSLRSIKKSIFSCIFQVVFMGLALLATVTSEDNKVEAPSTS 63
          IPS  LQA PT  QMG       + K   F  I +V FM LA  A + + + K+E P + 
Sbjct: 3  IPSLLLQAQPTLAQMGHIMNKGFTQKSYWFPWITKVGFMVLASCACMVTSEEKIEDPLSG 62

Query: 64 SSLWCITECGTCPLIC 79
          S   CI+EC TCP IC
Sbjct: 63 S--LCISECATCPTIC 76