Miyakogusa Predicted Gene

Lj3g3v0290230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0290230.1 tr|G7IHX8|G7IHX8_MEDTR DNA repair protein
radA-like protein OS=Medicago truncatula GN=MTR_2g100640
P,62.29,0,seg,NULL; no description,NULL; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL; sms: DNA repair prot,CUFF.40443.1
         (589 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g21360.1                                                       688   0.0  
Glyma15g02410.1                                                       574   e-163
Glyma07g01700.1                                                       219   6e-57
Glyma13g42980.1                                                       206   8e-53

>Glyma08g21360.1 
          Length = 560

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/480 (72%), Positives = 393/480 (81%), Gaps = 9/480 (1%)

Query: 112 TQWVCINCGHEAGQWWGTCASCDMVGTMKVFHEPKLGDADDKARNW--LAD-VVGSWLPQ 168
            QWVC NCG+ AGQWWG C SC + GTMK   E K  DAD     +  L D VVGSWLPQ
Sbjct: 81  VQWVCCNCGYSAGQWWGMCRSCSVSGTMK---EAKFSDADTVVSGFSVLEDGVVGSWLPQ 137

Query: 169 RPDQLRPMKLGEVNRGFNQQDWRIPLSGPFGDEVSRVLGGGLVPGSLTLVSGDPGVGKST 228
           +  ++RP++L EVN+G +   WRIPLSGPFGDEVSRV GGGLVPGSLTL+ GDPGVGKST
Sbjct: 138 QEGEMRPLRLTEVNKGLDHHHWRIPLSGPFGDEVSRVFGGGLVPGSLTLIGGDPGVGKST 197

Query: 229 LLLQVAAMIADGHKGGEASPVVYVSGEESLQQIGHRADRLGIKSDIYLYSSTDIEDLLKK 288
           LLLQ+AA+IA G   GEA PVVYVSGEES++QIG+RADRL I+SDIYLYSS D+ED+LKK
Sbjct: 198 LLLQIAAIIAKGDSDGEACPVVYVSGEESVEQIGNRADRLRIESDIYLYSSNDVEDILKK 257

Query: 289 AQSLSPRALVVDSIQTVYSKAIAASAGGPVQVKECTWALMRFAKTTNIPVLLIGHVTKSG 348
            Q LSP AL+VDSIQTVY K I  S GG +QVKECT AL+RFAK TNIPVLLIGHVTKSG
Sbjct: 258 VQYLSPGALIVDSIQTVYLKGIMGSPGGIMQVKECTSALLRFAKKTNIPVLLIGHVTKSG 317

Query: 349 DIAGPRLLEHIVDVVLYMEGERYTTYRMLRAVKNRFGSTDELGVFEMSQLGFRAVSNASE 408
           DIAGPR+LEHIVDVVLYMEGE+Y+++RMLRAVKNRFGS DELGVFEMS  G +AVSNASE
Sbjct: 318 DIAGPRVLEHIVDVVLYMEGEKYSSHRMLRAVKNRFGSADELGVFEMSHSGLQAVSNASE 377

Query: 409 MFLTEQDSGSDVLAGLAITVIMDGSRAFVIEIQALCLPKSSVSSPQLVGIQTNRANMIKC 468
           MFL+EQ   S++LAGLA+ VIMDGSR F+IEIQALCL   S  S Q+ GIQ  RA+MI  
Sbjct: 378 MFLSEQLLDSEILAGLAVAVIMDGSRTFLIEIQALCL-SGSTGSRQVNGIQQKRADMIIS 436

Query: 469 VLIKQAGLHLQENVLFLNVVGGMKLEESETAGDLAIAAAICSSFLEFPMPKDIAFIGEIG 528
           VLIKQAGL LQE+ +FLNVV G+ L  +ETAGDLAIAAAICSS LE P+P DIAFIGEIG
Sbjct: 437 VLIKQAGLRLQEHAVFLNVVSGLAL--TETAGDLAIAAAICSSCLEIPIPNDIAFIGEIG 494

Query: 529 LSGELRTVPRIEKRIHTVAKLGYRMCVVPKQVEKVLGTVGIENMQVVCCRNLKEFINTVF 588
           L GELR VPR+EKR++TVAKLGYRMC+VPK  EK LGT G+E M+VV CRNLKE INTVF
Sbjct: 495 LGGELRMVPRMEKRVYTVAKLGYRMCIVPKVAEKALGTEGLEKMEVVGCRNLKEVINTVF 554


>Glyma15g02410.1 
          Length = 417

 Score =  574 bits (1479), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 306/457 (66%), Positives = 337/457 (73%), Gaps = 47/457 (10%)

Query: 135 MVGTMKVFHEPKLGDADDKARNWLA---DVVGSWLPQRPDQLRPMKLGEVNRGFNQQDWR 191
           MVGTM  FHE KL   D K+R  L    D VG WLPQRP+ LRP+KL EVNRGFN Q WR
Sbjct: 1   MVGTMNEFHESKL--TDSKSRGGLEVSEDAVGLWLPQRPEDLRPVKLEEVNRGFNYQQWR 58

Query: 192 IPLSGPFGDEVSRVLGGGLVPGSLTLVSGDPGVGKSTLLLQVAAMIADGHKGGEASPVVY 251
           IPLSG FG+EVS VLGGGLVPGSLTLV GDPG+GKSTLLLQ+AAMIA+     E  PVVY
Sbjct: 59  IPLSGSFGNEVSTVLGGGLVPGSLTLVGGDPGIGKSTLLLQIAAMIANECSDYEGPPVVY 118

Query: 252 VSGEESLQQIGHRADRLGIKSDIYLYSSTDIEDLLKKAQSLSPRALVVDSIQTVYSKAIA 311
           VSGEESLQQIG RADRLGIKS+IYLYSSTDIED+L K   LSPRALVVDSIQTVY K I 
Sbjct: 119 VSGEESLQQIGIRADRLGIKSNIYLYSSTDIEDILTKTHGLSPRALVVDSIQTVYLKTII 178

Query: 312 ASAGGPVQVKECTWALMRFAKTTNIPVLLIGHVTKSGDIAGPRLLEHIVDVVLYMEGERY 371
            SAGG +QVKECT ALMRFAKTTNI V L                           GE+Y
Sbjct: 179 GSAGGIMQVKECTAALMRFAKTTNISVFL---------------------------GEKY 211

Query: 372 TTYRMLRAVKNRFGSTDELGVFEMSQLGFRAVSNASEMFLTEQDSGSDVLAGLAITVIMD 431
           + YRMLRAVKNRFGSTDEL V EMSQ G + VSNASEMFLT+Q S S+VLAGLAI VIMD
Sbjct: 212 SPYRMLRAVKNRFGSTDELAVLEMSQSGLQVVSNASEMFLTQQHSDSNVLAGLAIAVIMD 271

Query: 432 GSRAFVIEIQALCLPKSSVSSPQLVGIQTNRANMIKCVLIKQAGLHLQENVLFLNVVGGM 491
           GSR F+IEIQALCL    VSS    GI  N+AN+IKC              +FLNVV GM
Sbjct: 272 GSRTFLIEIQALCLTHCPVSSSLSNGINANKANIIKC-------------AVFLNVVSGM 318

Query: 492 KLEESETAGDLAIAAAICSSFLEFPMPKDIAFIGEIGLSGELRTVPRIEKRIHTVAKLGY 551
            +  +ETAGDLAIAAAICSSFLEFP+P+  AFIGEIGL GELR VPRIEKR++T+ KLGY
Sbjct: 319 TV--TETAGDLAIAAAICSSFLEFPIPEGTAFIGEIGLGGELRMVPRIEKRVNTLVKLGY 376

Query: 552 RMCVVPKQVEKVLGTVGIENMQVVCCRNLKEFINTVF 588
           RMCVVPKQ EK+L T G+  M+VV C++LKE IN VF
Sbjct: 377 RMCVVPKQAEKLLETEGLGKMKVVGCKDLKEVINAVF 413


>Glyma07g01700.1 
          Length = 189

 Score =  219 bits (558), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 116/178 (65%), Positives = 137/178 (76%), Gaps = 3/178 (1%)

Query: 411 LTEQDSGSDVLAGLAITVIMDGSRAFVIEIQALCLPKSSVSSPQLVGIQTNRANMIKCVL 470
           L E+   S++LAGLAI +IMDGS+ F+IEIQALCL  S+  S Q+ GIQ  RA+MI  VL
Sbjct: 7   LCEKHLDSEILAGLAIAIIMDGSQTFLIEIQALCLSGST-GSRQVHGIQLKRADMIISVL 65

Query: 471 IKQAGLHLQENVLFLNVVGGMKLEESETAGDLAIAAAICSSFLEFPMPKDIAFIGEIGLS 530
           IKQAGL LQE+ +F N V G+ L  +ETAGDLAIAAAICS  LE P+  DIAFIGEI L 
Sbjct: 66  IKQAGLPLQEHAVFFNFVSGLAL--AETAGDLAIAAAICSCCLEIPILNDIAFIGEIDLG 123

Query: 531 GELRTVPRIEKRIHTVAKLGYRMCVVPKQVEKVLGTVGIENMQVVCCRNLKEFINTVF 588
           GELR VPR+EKR++TV KLG+RMC+VPK  EK LGT G E M+VV CRNLK+ INTVF
Sbjct: 124 GELRMVPRMEKRVYTVTKLGFRMCIVPKVAEKALGTEGFEKMEVVGCRNLKDIINTVF 181


>Glyma13g42980.1 
          Length = 344

 Score =  206 bits (523), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 102/151 (67%), Positives = 112/151 (74%), Gaps = 5/151 (3%)

Query: 112 TQWVCINCGHEAGQWWGTCASCDMVGTMKVFHEPKLGDADDKARNWLA---DVVGSWLPQ 168
           TQWVC NCGH  G+WWG C  C +VGTM  F E KL     K+   LA   D VGSWLPQ
Sbjct: 60  TQWVCCNCGHSTGKWWGQCPECQIVGTMNEFRESKL--TGTKSSGGLAVSEDPVGSWLPQ 117

Query: 169 RPDQLRPMKLGEVNRGFNQQDWRIPLSGPFGDEVSRVLGGGLVPGSLTLVSGDPGVGKST 228
           RP +LRP+KL E+NR FN Q WRIPLSG FG+EVS VLGGGLVPGSLTLV GDPG+GKST
Sbjct: 118 RPQELRPLKLEEINRRFNYQQWRIPLSGSFGNEVSTVLGGGLVPGSLTLVGGDPGIGKST 177

Query: 229 LLLQVAAMIADGHKGGEASPVVYVSGEESLQ 259
           LLLQ+AAMIA      E  PVVYVSGEESL+
Sbjct: 178 LLLQIAAMIAKECSDDEEPPVVYVSGEESLK 208



 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 51/77 (66%), Gaps = 8/77 (10%)

Query: 512 FLEFPMPKDIAFIGEIGLSGELRTVPRIEKRIHTVAKLGYRMCVVPKQVEKVLGTVGIEN 571
           FL FP    + +        EL  VPRI+KR++T+AKLGYRMCVVPKQ EK+L T G+  
Sbjct: 272 FLSFPQSPFVRW--------ELAPVPRIDKRVNTLAKLGYRMCVVPKQAEKLLETEGLGK 323

Query: 572 MQVVCCRNLKEFINTVF 588
           M+V+ C  LKE IN VF
Sbjct: 324 MKVLGCEVLKEVINAVF 340