Miyakogusa Predicted Gene
- Lj3g3v0260450.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0260450.1 tr|Q2QMR8|Q2QMR8_ORYSJ Os12g0594000 protein
OS=Oryza sativa subsp. japonica GN=LOC_Os12g40260 PE=4
S,44.64,1e-16,WD40 repeat-like,WD40-repeat-containing domain; WD40
repeats,WD40 repeat; WD40,WD40 repeat; no descr,CUFF.40829.1
(134 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma13g43290.1 108 2e-24
Glyma08g13850.1 84 3e-17
Glyma01g04340.1 79 2e-15
Glyma12g05170.1 79 2e-15
Glyma17g10100.1 78 3e-15
Glyma01g38900.1 78 3e-15
Glyma05g01790.1 76 1e-14
Glyma06g08920.1 74 3e-14
Glyma11g06420.1 73 1e-13
Glyma17g36520.1 71 3e-13
Glyma04g34940.1 71 4e-13
Glyma04g08840.1 70 7e-13
Glyma06g19770.1 69 2e-12
Glyma02g03350.1 68 3e-12
Glyma14g08610.1 63 9e-11
Glyma05g02830.1 60 6e-10
Glyma17g13500.1 59 1e-09
Glyma06g36980.1 54 4e-08
Glyma09g35890.1 54 4e-08
Glyma08g04510.1 49 2e-06
>Glyma13g43290.1
Length = 408
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/56 (89%), Positives = 54/56 (96%)
Query: 15 FAGQLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVG 70
FAGQLQYGGSIQGHTHAV+CLASV+++VVSGSADSTSRVW REQDGQHTCLAVL G
Sbjct: 323 FAGQLQYGGSIQGHTHAVLCLASVAKYVVSGSADSTSRVWAREQDGQHTCLAVLEG 378
>Glyma08g13850.1
Length = 392
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 63/101 (62%), Gaps = 5/101 (4%)
Query: 16 AGQLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPI 75
A + G+++GH A++CL +VS + SGSAD T R+W R DG++ CLAVL GHR P+
Sbjct: 293 ANHMVVSGALRGHQKAILCLVNVSDLLFSGSADRTVRIWKRAYDGRYGCLAVLDGHRKPV 352
Query: 76 RCVSAFIGGTRLVEDNEDSCTVC--TGSLDGVLKLWRVSHT 114
+ ++A + C+V +GSLDG +K+W+VS T
Sbjct: 353 KSLAAI---PEEYDQTSPKCSVSVFSGSLDGEIKVWQVSIT 390
>Glyma01g04340.1
Length = 433
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 59/93 (63%), Gaps = 4/93 (4%)
Query: 23 GSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIRCVSAFI 82
G+++GHT A++CL V+ V SGSAD++ RVW R + ++CLAV GHR P++C++ +
Sbjct: 334 GALRGHTKAILCLVVVADLVCSGSADNSVRVWRRGAEKSYSCLAVFEGHRRPVKCLAMAV 393
Query: 83 ----GGTRLVEDNEDSCTVCTGSLDGVLKLWRV 111
GG R + N S V + LD +K+W++
Sbjct: 394 DSNSGGPREDDHNSSSYLVYSAGLDCEIKVWQI 426
>Glyma12g05170.1
Length = 614
Score = 78.6 bits (192), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/109 (40%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 7 FTNFFSFHFAGQLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLA 66
NF+ G +GG ++GH AV+CLA+ V SGSAD VW R+++G HTC +
Sbjct: 315 LVNFWERDQKGGFLHGGVLRGHKLAVLCLAAAGNLVFSGSADKNVCVWKRDENGFHTCHS 374
Query: 67 VLVGHRGPIRCVS---AFIGGTRLVEDNEDSCTVCTGSLDGVLKLWRVS 112
VL GH GP++C++ A E V TGSLD +K+W VS
Sbjct: 375 VLTGHSGPVKCIAVEEAEPPPEGRCEKGNLRWIVYTGSLDKSVKVWCVS 423
>Glyma17g10100.1
Length = 406
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 59/95 (62%)
Query: 17 GQLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIR 76
G+L G+++GH +++CLA VS V SGS D T R+W Q +++CLAVL GHR PI+
Sbjct: 305 GKLLVVGALRGHAKSILCLAVVSDLVCSGSEDKTVRIWRGVQKDEYSCLAVLEGHRSPIK 364
Query: 77 CVSAFIGGTRLVEDNEDSCTVCTGSLDGVLKLWRV 111
++A + ++ S + + SLD +KLW++
Sbjct: 365 SITAALDLSQDPSSQATSFLLYSASLDSHVKLWQL 399
>Glyma01g38900.1
Length = 449
Score = 77.8 bits (190), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 19 LQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIRCV 78
L++ G ++GH AV+CLA+ V SGSAD VW R +HTC+ +L GH GP++C+
Sbjct: 322 LEHKGVLRGHKLAVLCLAAAGSLVFSGSADMAICVWKRTLSEEHTCVKILSGHTGPVKCL 381
Query: 79 SAFIGGTRLVEDNEDSCTVCTGSLDGVLKLWRVSHTNN 116
+A + NE + +GSLD +K+W+VS N
Sbjct: 382 AAEKDPEAMC--NERRWILYSGSLDKSVKVWKVSENIN 417
>Glyma05g01790.1
Length = 394
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 17 GQLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIR 76
G+L G+++GHT +++CLA VS V SGS D T R+W R +++CLAVL GHR PI+
Sbjct: 293 GKLLVVGALRGHTRSILCLAVVSDLVCSGSEDKTVRIW-RGVQKEYSCLAVLEGHRSPIK 351
Query: 77 CVSAFIGGTRLVEDNED-SCTVCTGSLDGVLKLWRV 111
++A + + ++E+ S V + SLD +K+W+V
Sbjct: 352 SLTAAVDRSEQDPNSEEPSFLVYSASLDCDVKVWQV 387
>Glyma06g08920.1
Length = 371
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 18 QLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDG-QHTCLAVLVGHRGPIR 76
+ +GG +QGH AV+CLA+V + SGS D+T RVW RE+ H CL VL GHRGP+R
Sbjct: 285 RFNHGGFLQGHRFAVLCLATVGNMLFSGSEDTTIRVWRREEGSCYHECLTVLDGHRGPVR 344
Query: 77 CVSAFIGGTRLV 88
C++A + ++V
Sbjct: 345 CLAACLEMEKVV 356
>Glyma11g06420.1
Length = 340
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 18 QLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIRC 77
L++ G ++GH AV+CLA+ V SGSAD VW R + HTC+ +L GH GP++C
Sbjct: 250 NLEHKGVLRGHKLAVLCLATAGSLVFSGSADMAICVWKRSLNDDHTCVNILSGHTGPVKC 309
Query: 78 VSAFIGGTRLVEDNEDSCTVCTGSLDGVLKLWR 110
++A + NE + +GSLD +K+W+
Sbjct: 310 LAAERDPEAMC--NERRWILYSGSLDKSVKVWK 340
>Glyma17g36520.1
Length = 455
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 21 YGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIRCVSA 80
+GG ++GH AV+CL + V SGSAD T VW RE HTC++VL GH GP++C++
Sbjct: 319 HGGVLKGHKLAVLCLTAAGTLVFSGSADKTICVWKRE-GLIHTCMSVLTGHDGPVKCLAV 377
Query: 81 FIGGTRLVE-DNEDSCTVCTGSLDGVLKLWRVSHT 114
+ D E ++ +GSLD +K+W VS +
Sbjct: 378 EEDRKAAAKGDRERLWSLYSGSLDKSVKIWSVSES 412
>Glyma04g34940.1
Length = 418
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 62/100 (62%), Gaps = 5/100 (5%)
Query: 17 GQLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDG-QHTCLAVLVGHRGPI 75
G++ G+++GHT +++CL+ + V SGSAD T RVW D +++CLAVL GHRG I
Sbjct: 314 GKMGVVGALRGHTMSILCLSVAADLVCSGSADKTIRVWRGSVDAHEYSCLAVLEGHRGSI 373
Query: 76 RCVSAFI---GGTRLVEDNED-SCTVCTGSLDGVLKLWRV 111
+C+SA + T +E S V +G LD +K+W++
Sbjct: 374 KCISAVVDHCNNTNTWSQSEALSFLVYSGGLDCHIKVWQI 413
>Glyma04g08840.1
Length = 353
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 18 QLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDG-QHTCLAVLVGHRGPIR 76
+ +GG +QGH AV+CLA+V + SGS D+T RVW RE+ H CL VL GHRGP++
Sbjct: 277 RFNHGGFLQGHRFAVLCLATVGNMIFSGSEDTTIRVWRREEGSCYHECLTVLDGHRGPVK 336
Query: 77 C 77
C
Sbjct: 337 C 337
>Glyma06g19770.1
Length = 421
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Query: 17 GQLQYGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVW-GREQDGQHTCLAVLVGHRGPI 75
G++ G+++GHT +++CL+ V+ V SGSAD+T R+W G +++CLAVL GHR I
Sbjct: 316 GKMGVVGALRGHTKSILCLSVVADLVCSGSADTTIRIWRGCVDSHEYSCLAVLEGHRASI 375
Query: 76 RCVSAFIGGTRLVEDNEDSCT-----VCTGSLDGVLKLWRV 111
+C+SA + + S V +G LD +K+W++
Sbjct: 376 KCISAVVDCNNNNNNTSQSEALLSFLVYSGGLDCDIKVWQI 416
>Glyma02g03350.1
Length = 380
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 11/100 (11%)
Query: 23 GSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGR----EQDGQHTCLAVLVGHRGPIRCV 78
G+++GHT A++CL S V SGSAD++ R+W R E+ ++CLAVL HR P++C+
Sbjct: 277 GALRGHTKAILCLVVESDLVCSGSADNSVRIWRRSVENEKKSYYSCLAVLESHRRPVKCL 336
Query: 79 SAFIGGTRLV-------EDNEDSCTVCTGSLDGVLKLWRV 111
+ + +D+ S V + LD +K+W++
Sbjct: 337 AMAVDSNSGGGGGGPHEDDDSRSYLVYSAGLDCDIKVWQI 376
>Glyma14g08610.1
Length = 419
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 47/74 (63%), Gaps = 9/74 (12%)
Query: 21 YGGSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIRCVSA 80
+GG ++GH AV+CLA+ V SGSAD T VW RE HTC++VL GH GP++C++
Sbjct: 307 HGGVLKGHKLAVLCLAAAGTLVFSGSADKTLCVWKRE-GVIHTCVSVLTGHNGPLKCLA- 364
Query: 81 FIGGTRLVEDNEDS 94
VE+N +S
Sbjct: 365 -------VEENRES 371
>Glyma05g02830.1
Length = 337
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 7/88 (7%)
Query: 24 SIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQ----DGQHTCLAVLVGHRGPIRCVS 79
+++GH A++CL V+ + S SAD T R+W RE+ DG + C AVL GH P++ +
Sbjct: 253 TLRGHGGAILCLIHVAGLLASASADLTVRIWRRERESSGDGGYCCRAVLEGHEKPVKSLV 312
Query: 80 AFIGGTRLVEDNEDSCTVCTGSLDGVLK 107
AF G D+ T+ +GSLDG ++
Sbjct: 313 AFSDGE---GDSNGVVTLFSGSLDGEIR 337
>Glyma17g13500.1
Length = 343
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Query: 24 SIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQ--HTCLAVLVGHRGPIRCVSAF 81
+++GH A++CL V+ + S SAD T R+W RE+ + C AVL GH P++ + AF
Sbjct: 255 TLRGHGGAILCLIHVAGLLASASADLTVRIWQRERGSTNGYFCRAVLEGHEKPVKSLVAF 314
Query: 82 --IGGTRLVEDNEDSCTVCTGSLDGVLKLWRV 111
G R D+ T+ +GSLDG +++W +
Sbjct: 315 SDAEGER---DSNAIVTLFSGSLDGEIRVWEL 343
>Glyma06g36980.1
Length = 105
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 23 GSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIRCVS 79
G +GH AV+CLA+ FV GS+D+T +W + + H C+ VL+GH GP++C++
Sbjct: 34 GVFKGHKLAVLCLATTGTFVFRGSSDNTLCMW-KHKGLIHMCMTVLMGHDGPLKCLA 89
>Glyma09g35890.1
Length = 387
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 12/94 (12%)
Query: 26 QGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIRCVSAF---I 82
+ H AV+C+ + + SGSAD T +W RE G+ + V+ GH GP++C+ A I
Sbjct: 293 KAHEMAVLCMCLMGEILCSGSADKTIGIWRRETFGKLCKVGVISGHEGPVKCLQASPNRI 352
Query: 83 GGTRLVEDNEDSCTVCTGSLDGVLKLWRVSHTNN 116
GG L+ +GSLD +++W V T +
Sbjct: 353 GGGFLLY---------SGSLDRSVRVWWVPSTRS 377
>Glyma08g04510.1
Length = 1197
Score = 48.9 bits (115), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 49/104 (47%), Gaps = 21/104 (20%)
Query: 23 GSIQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHT-CLAVLVGHRGPIRCVSAF 81
+++GHT + ++S VVSGS D + VW D Q T L L GH GP+ CV
Sbjct: 896 ATLKGHTRTIRAISSDRGKVVSGSDDQSVLVW----DKQTTQLLEELKGHDGPVSCVRT- 950
Query: 82 IGGTRLVEDNEDSCTVCTGSLDGVLKLW-----RVSHTNNQCSS 120
+ G R V T S DG +K+W R T +CSS
Sbjct: 951 LSGER----------VLTASHDGTVKMWDVRTDRCVATVGRCSS 984
Score = 47.4 bits (111), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 25 IQGHTHAVMCLASVSRFVVSGSADSTSRVWGREQDGQHTCLAVLVGHRGPIRCVSAFIGG 84
+ GHT + + V V++GS D T+R+W + T AVL H GPI C
Sbjct: 1021 LSGHTQWIRSIRMVGDTVITGSDDWTARIWSVSRG---TMDAVLACHAGPILC------- 1070
Query: 85 TRLVEDNEDSCTVCTGSLDGVLKLWRVSHTNNQCSSQAGV 124
VE + + TGS DG+L+ W +C+ +
Sbjct: 1071 ---VEYSSLDRGIITGSTDGLLRFWENDDGGIRCAKNVTI 1107