Miyakogusa Predicted Gene
- Lj3g3v0160740.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj3g3v0160740.1 tr|G7II52|G7II52_MEDTR Regulator of telomere
elongation helicase OS=Medicago truncatula GN=MTR_2g102,71.28,0,no
description,Helicase-like, DEXD box c2 type; DEAD-like helicases
superfamily,Helicase, superfamil,CUFF.40337.1
(479 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma13g43620.1 636 0.0
Glyma14g39780.1 148 1e-35
Glyma15g01760.1 116 5e-26
Glyma07g00710.1 109 8e-24
Glyma12g00200.1 107 2e-23
Glyma16g28290.1 88 2e-17
Glyma02g09080.1 87 4e-17
Glyma04g43680.1 81 3e-15
Glyma03g42570.1 69 2e-11
>Glyma13g43620.1
Length = 1007
Score = 636 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/488 (67%), Positives = 358/488 (73%), Gaps = 31/488 (6%)
Query: 1 MPTYKIRGIDVDFPFDAYDSQLVYMDKVLQSLQQKRNALLESPTGTGKTLCLLCATLAWR 60
MPTYKIRGIDVDFP++AY+SQLVYMDKV+QSLQ+K NALLESPTGTGKTLCLLCATLAWR
Sbjct: 23 MPTYKIRGIDVDFPYEAYESQLVYMDKVIQSLQEKCNALLESPTGTGKTLCLLCATLAWR 82
Query: 61 KSLXXXXXXXXXXXXXXXXDKSDAGWKVTPPPSQFPTIVYASRTHSQIRQVVRELKRTSY 120
KSL K+D S+F TIVYASRTHSQIRQV++ELKRTSY
Sbjct: 83 KSLGSFTTGVSMQADDKSEGKNDVS-SSQSESSRFSTIVYASRTHSQIRQVIQELKRTSY 141
Query: 121 RPKMVVLGSREQLCIHDQVKSLQGKSQTNACRFLCRRGKKAXXXXXXXXHVPENHKQRPT 180
RPKMVVLGSREQLCIHD+VK L+GK+QTNACR LCRR K
Sbjct: 142 RPKMVVLGSREQLCIHDEVKLLRGKTQTNACRLLCRRRGK-------------------- 181
Query: 181 RNRCKHFGRVHGYLKNDPHVGEQPVDIEDLVNIGTSHGPCPYYLSKELHKVVDIVFAPYN 240
C HF +V Y+K++P +GE+PVDIEDLVNIG GPCPYYLSKELHK VDIVFAPYN
Sbjct: 182 -RHCNHFKKVPEYMKDNPQLGEEPVDIEDLVNIGRRFGPCPYYLSKELHKFVDIVFAPYN 240
Query: 241 YLIDRGYRKSLHFSWKKSILIFDEAHNLESICADAASFDLTSSLLTTCISDAHRCIGLAK 300
YLIDRGYRKSL SW SILIFDEAHNLESICADAASFDL S LLT CIS+A CI L+
Sbjct: 241 YLIDRGYRKSLQLSWSNSILIFDEAHNLESICADAASFDLPSWLLTACISEAESCIDLSI 300
Query: 301 GRRDKSTDKPRNPDDFXXXXXXXXXXXXXXXXVPIESKELGYTKPGPYIYALLADLNIRH 360
RRDKS DK +NPDDF VPIESKELGYTKPGPYIY LLADLNI H
Sbjct: 301 ERRDKSNDKSQNPDDFAILRALLLKLEKRIAEVPIESKELGYTKPGPYIYELLADLNITH 360
Query: 361 ETASKLTDILEAASTLVEEDNQENSTGNICRLDSIREILDLVFRDGETTHAKYYRVHVRE 420
+TASKL DI+ ASTL+EE NQ+ STG +CRLD I EILD+VFRDG T HAKYYR+ R
Sbjct: 361 KTASKLRDIVAVASTLLEEHNQQKSTGTVCRLDRIGEILDMVFRDGRTAHAKYYRLLGRA 420
Query: 421 ---------VEARAANGSKGKVSRTLSWWCFNPGIAMEVFPKLGVGSIILTSGTLSPMES 471
+E KVSRTLSWWCFNPGIAME FPK GV SIILTSGTLSPMES
Sbjct: 421 FGSCMCFLGLECEQELAFISKVSRTLSWWCFNPGIAMEDFPKYGVRSIILTSGTLSPMES 480
Query: 472 FAQELKLD 479
FAQELKLD
Sbjct: 481 FAQELKLD 488
>Glyma14g39780.1
Length = 1106
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 149/521 (28%), Positives = 224/521 (42%), Gaps = 114/521 (21%)
Query: 3 TYKIRGIDVDFPFDAYDSQLVYMDKVLQSLQQKR-----NALLESPTGTGKTLCLLCATL 57
Y I G+ V+FP+ Y SQ +M +V+ +L + + +ALLESPTGTGK+L LLC++L
Sbjct: 8 VYHIGGLQVEFPYQPYGSQFAFMGRVISTLNRAQKEGHCHALLESPTGTGKSLSLLCSSL 67
Query: 58 AWRKSLXXXXXXXXXXXXXXXXDKSDAGWKV---TPPPSQ------------------FP 96
AW+ + G V P S+ P
Sbjct: 68 AWQHHYKSQHHHLKSAHEATADPLAYGGGFVPDEVPLSSESLDRTQSEGNNKKQKKKEAP 127
Query: 97 TIVYASRTHSQIRQVVRELKRTSYRPKMVVLGSREQLCIHDQVKSLQGKSQTN----ACR 152
TI YASRTHSQI QVVREL++T+YR M VL SR+ C + K++ GK N
Sbjct: 128 TIYYASRTHSQISQVVRELRKTAYRVPMAVLASRKHYCTN---KNIMGKENINDECLISM 184
Query: 153 FLCRRGKKAXXXXXXXXHVPENHKQRPTRNRCKHFGRVHGYLKNDPHVGEQPVDIEDLVN 212
LCR K K P+ +H N+ H DIEDLV
Sbjct: 185 HLCRNAHKV--------------KGHPS---------LHKGGCNEVH------DIEDLVK 215
Query: 213 IGTSHGPCPYYLSKELHKVVDIVFAPYNYLIDRGYRKSLHFSWKKSILIFDEAH-NLESI 271
+G C YY ++ + +VF PYNY+I+ R ++ K +I+I DEAH ++E
Sbjct: 216 VGQLVKGCSYYAARSMSDDAQLVFCPYNYIINPVIRAAMDVDIKGAIVILDEAHVDIEED 275
Query: 272 CADAASFDLTSSLLTTCISDAHRCIGLAKGRRDKSTDKPRNPDDFXXXXXXXXXXXXXXX 331
D +L L + ++ ++ + ++ +N
Sbjct: 276 VVDKLQMELQQ--LCSIKAEIYQPLYEMTQGLTSWMEQKKN------------------- 314
Query: 332 XVPIESKELGYTKPGPYIYALLADLNIRHETASKLTD-----ILEAAS------TLVEED 380
+E ++ + Y+ D +R + ++ +LE A+ T +E D
Sbjct: 315 --KLEKRDFQH-----YVSCWTGDKALRELEEANISKQCFPILLECATKAIKVATDLETD 367
Query: 381 NQENSTGNICRLDSIREILDLVF-RDGETTHAKYYRVHVREVEARAANGSKGKVSR---- 435
S ++ L+ + L F R+G +H Y++ ++ R G+ SR
Sbjct: 368 APHISAMSVITLEGLFSSLTYFFSRNG--SHMLDYQLALQ----RCIREDTGRASRNWTY 421
Query: 436 TLSWWCFNPGIAMEVFPKLGVGSIILTSGTLSPMESFAQEL 476
TLS WC NP + L + S+ILTSGTLSPM SF EL
Sbjct: 422 TLSLWCLNPAVVFRDVANLSL-SVILTSGTLSPMASFTSEL 461
>Glyma15g01760.1
Length = 196
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 80/138 (57%), Gaps = 20/138 (14%)
Query: 32 LQQKRNALLESPTGTGKTLCLLCATLAWRKSLXXXXXXXXXXXXXXXXDKSDAGWKVTPP 91
LQ K + + SPTGTGKTLCLLCATLAWRKSL K++ T
Sbjct: 44 LQNKDSPMASSPTGTGKTLCLLCATLAWRKSLGSFTTGVSMQTDNRLEGKNEVSLSQT-E 102
Query: 92 PSQFPTIVYASRTHSQIRQVVRELKRTSYRPKMVV-------------------LGSREQ 132
S+F TIVYASRTH QIRQV++ELKRTSY + LGSREQ
Sbjct: 103 SSRFSTIVYASRTHIQIRQVIQELKRTSYSFCFLSSWGLWSSGRNMHDSVDYPGLGSREQ 162
Query: 133 LCIHDQVKSLQGKSQTNA 150
LCIHD+VK L GK++TNA
Sbjct: 163 LCIHDEVKLLWGKTKTNA 180
>Glyma07g00710.1
Length = 897
Score = 109 bits (272), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 106/195 (54%), Gaps = 11/195 (5%)
Query: 98 IVYASRTHSQIRQVVRELKRTSYRPKM--VVLGSREQLCIHDQVKSLQGKSQTNACRFLC 155
+ + SRTHSQ+ Q ++EL+RT + +M V LGSR+ LCI+++V +L ++ N
Sbjct: 190 VYFCSRTHSQLSQFIKELRRTVFANEMNVVSLGSRKNLCINEEVVALGNSTRINERCLEL 249
Query: 156 RRGKKAXXXXXXXXHVPENHKQRPTRNRC----KHFGRVHGYLKNDPHVGEQ-PVDIEDL 210
++ KK V + + C KH RV +N+ V +Q P+DIEDL
Sbjct: 250 QKKKKNEATKVKNLKVGAGVCRTKASSGCPMLRKH--RVQQEFRNE--VSQQGPLDIEDL 305
Query: 211 VNIGTSHGPCPYYLSKELHKVVDIVFAPYNYLIDRGYRKSLHFSWKKSILIFDEAHNLES 270
N+G + G CPYY S+ L + D+V PY L+ + R++L + K +I+I DEAHNL
Sbjct: 306 ANLGRTMGACPYYGSRSLVQGADLVVLPYQSLLSKSSRETLGLNLKSNIIIIDEAHNLAD 365
Query: 271 ICADAASFDLTSSLL 285
+ +TSS L
Sbjct: 366 SLINMYDSKITSSQL 380
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 13 FPFDAYDSQLVYMDKVLQSLQQKRNALLESPTGTGKTLCLLCATLAW 59
FPF+ Y Q+ +M+ + +SL Q ++LESPTGTGKT+ ++C+ L W
Sbjct: 13 FPFEPYSIQIDFMNSLYESLNQGGVSMLESPTGTGKTMSVICSALQW 59
>Glyma12g00200.1
Length = 316
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 131/298 (43%), Gaps = 51/298 (17%)
Query: 3 TYKIRGIDVDFPFDAYDSQLVYMDKVLQSLQ--QKR---NALLESPTGTGKTLCLLCATL 57
Y I G+ V+FP+ Y SQ +M +V+ +L QK + LLESP+GTGK+L LLC++L
Sbjct: 12 VYLIGGLQVEFPYQPYGSQFAFMARVISTLNLAQKEGHCHTLLESPSGTGKSLSLLCSSL 71
Query: 58 AWRKSLXXXXXXXXXXXXXXXXDKSDAGWKV---TPPPSQF------------PTIVYAS 102
AW+ L W + P +QF PTI YAS
Sbjct: 72 AWQHHLNLNITISSLRRRQPSI--LWLWWWIFSEIPDHTQFEINNKKQKKKEAPTIYYAS 129
Query: 103 -RTHSQIRQVVRELKRTSYRPKMVVLGSREQLCIHDQVKSLQGKSQTNACRFLCRRGKKA 161
RTHSQI QVVREL++T+YR M VL + QG ++ C +C
Sbjct: 130 RRTHSQISQVVRELRKTAYRVPMAVLIRQ------------QGVQNSSECMLIC------ 171
Query: 162 XXXXXXXXHVPENHKQRPTRNRCKHFGRVHGYLKNDPHVGEQPVDIEDLVNIGTSHGPCP 221
+ H P + + K D EDLV +G C
Sbjct: 172 ------SCFLSIFHITFPEVKMLIKSKVILPFRKEDA----MWCVTEDLVKVGQLVKGCC 221
Query: 222 YYLSKELHKVVDIVFAPYNYLIDRGYRKSLHFSWKKSILIFDEAHNLESICADAASFD 279
YY ++ + +VF PYNY+ + R + K I+I DEAHN+E I DA S D
Sbjct: 222 YYGARSMSNDAQLVFCPYNYINNPVIRAPMEVDIKVGIVILDEAHNMEDITCDAGSVD 279
>Glyma16g28290.1
Length = 758
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 143/323 (44%), Gaps = 60/323 (18%)
Query: 4 YKIRGIDVDFPFD-AYDSQLVYMDKVLQSLQQKRNALLESPTGTGKTLCLLCATLAWRKS 62
++I I V FP+D Y Q YM ++ ++L K + LLE PTGTGKT+ LL ++
Sbjct: 3 FEIEDITVYFPYDNIYPEQYSYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSY--- 59
Query: 63 LXXXXXXXXXXXXXXXXDKSDAGWKVTPPPSQFPTIVYASRTHSQIRQVVRELKRT-SYR 121
V P ++Y +RT ++ + + EL+ Y+
Sbjct: 60 -------------------------VLSKPHSPLKLLYCTRTVHEMEKTLAELRLLHDYQ 94
Query: 122 -------PKMVVLG--SREQLCIHDQVKSLQGKSQTNA-CRFLCRRGKKAXXXXXXXXHV 171
K++ LG SR+ LC++ +V + + + +A CR L +A V
Sbjct: 95 LRHLGPAAKILALGLSSRKNLCVNPRVLAAENRDSVDAGCRKLTASWVRA---------V 145
Query: 172 PENHKQRPTRNRCKHFGRVHGYLKNDPHVGEQPVDIEDLVNIGTSHGPCPYYLSKELHKV 231
+ PT + + R P V ++DL G G CPYYL++ + +
Sbjct: 146 AAENPGVPTCEFFEQYERAGSSAVLPPGV----YTLQDLRVYGKEKGWCPYYLARHMVQF 201
Query: 232 VDIVFAPYNYLIDRGYRKSLHFSWKK-SILIFDEAHNLESICADAASFDLTSSLLTTCIS 290
++V Y YL+D + +K S+++FDEAHN++++C +A L+ S+ I
Sbjct: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEA----LSVSVRRQTIE 257
Query: 291 DAHRCIGLAKGRRD--KSTDKPR 311
A R + + D K+TD R
Sbjct: 258 GARRNLNRMRQEIDKFKATDAGR 280
>Glyma02g09080.1
Length = 758
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 141/322 (43%), Gaps = 60/322 (18%)
Query: 5 KIRGIDVDFPFD-AYDSQLVYMDKVLQSLQQKRNALLESPTGTGKTLCLLCATLAWRKSL 63
+I I V FP+D Y Q YM ++ ++L K + LLE PTGTGKT+ LL ++
Sbjct: 4 EIEDITVYFPYDKIYPEQYSYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSY---- 59
Query: 64 XXXXXXXXXXXXXXXXDKSDAGWKVTPPPSQFPTIVYASRTHSQIRQVVRELKRTSY--- 120
V P ++Y +RT ++ + + EL+ +
Sbjct: 60 ------------------------VLSKPHSPLKLLYCTRTVHEMEKTLAELRLLHHYQL 95
Query: 121 -----RPKMVVLG--SREQLCIHDQVKSLQGKSQTNA-CRFLCRRGKKAXXXXXXXXHVP 172
K++ LG SR+ LC++ +V + + + +A CR L +A V
Sbjct: 96 RHLGPAAKILALGLSSRKNLCVNPRVLAAENRDSVDAGCRKLTASWVRA---------VA 146
Query: 173 ENHKQRPTRNRCKHFGRVHGYLKNDPHVGEQPVDIEDLVNIGTSHGPCPYYLSKELHKVV 232
+ P+ + + R P V ++DL G G CPYYL++ + +
Sbjct: 147 AENPSVPSCEFFEQYERAGSSAVLPPGV----YTLQDLRAYGKEKGWCPYYLARHMVQFA 202
Query: 233 DIVFAPYNYLIDRGYRKSLHFSWKK-SILIFDEAHNLESICADAASFDLTSSLLTTCISD 291
++V Y YL+D + +K S+++FDEAHN++++C +A L+ S+ I
Sbjct: 203 NVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEA----LSVSVRRQTIEG 258
Query: 292 AHRCIGLAKGRRD--KSTDKPR 311
A R + + D K+TD R
Sbjct: 259 ARRNLSRMRQEIDKFKATDAGR 280
>Glyma04g43680.1
Length = 400
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 88/176 (50%), Gaps = 25/176 (14%)
Query: 3 TYKIRGIDVDFPFDAYDSQLVYMDKVLQSLQ--QKR---NALLESPTGTGKTLCLLCATL 57
Y + G+ V+FP+ Y SQ +M +V+ +L QK +ALL+SP+GTGK+L LLC++L
Sbjct: 17 VYLVGGLQVEFPYQPYGSQFAFMARVISTLNLVQKEGHCHALLKSPSGTGKSLSLLCSSL 76
Query: 58 AWRKSLXXXXXXXX----------------XXXXXXXXDKSDAGWKVTPPPSQFPTIVYA 101
AW+ L D + + PTI YA
Sbjct: 77 AWQHHLNLNMTISSPRRRQPPILWLWWRICSRGVSEIPDHTQIEINKKQKKKEAPTIYYA 136
Query: 102 SRTHSQIRQVVRELKRTSYRPKMVVLGSREQLCIHDQVKSLQGKSQT-NACRFLCR 156
SRTHSQI QVVREL++T+YR M VL R+ C K++ GK + C+ L +
Sbjct: 137 SRTHSQISQVVRELRKTAYRVPMAVLAWRKHCCT---TKNIIGKENIYDECKLLLK 189
>Glyma03g42570.1
Length = 267
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 33/184 (17%)
Query: 3 TYKIRGIDVDFPFDAYDSQLVYMDKVLQSLQ--QKR---NALLESPTGTGKTLCLLCATL 57
Y I G+ ++FP++ Y SQ +M +V+ +L QK +ALLESP+GTGK+L LLC++L
Sbjct: 12 VYLIGGLQLEFPYERYGSQFAFMARVISTLNLTQKEGHCHALLESPSGTGKSLSLLCSSL 71
Query: 58 AWRKS------------------------LXXXXXXXXXXXXXXXXDKSDAGWKVTPPPS 93
AW+ L K + +
Sbjct: 72 AWQHHYKSQHHHLKPASEATTDPLALVADLFSRRFHFLLFQKFPTIRKLRSTTRSRRKRK 131
Query: 94 QFPTIVYASRTHSQIRQVVRELKRTSYRPKMVVLGSREQLCIHDQVKSLQGKSQT-NACR 152
P I+ RTHSQI QVVREL++T+YR MVVL ++ C K++ GK + C+
Sbjct: 132 HQPYIMPHRRTHSQISQVVRELRKTAYRVPMVVLAWQKHYCT---TKNIIGKENIYDECK 188
Query: 153 FLCR 156
L +
Sbjct: 189 LLLK 192