Miyakogusa Predicted Gene

Lj3g3v0017520.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0017520.1 tr|G7JFP1|G7JFP1_MEDTR DNA-directed RNA
polymerase OS=Medicago truncatula GN=MTR_4g009200 PE=3
SV=1,38.5,0.000000000000001,seg,NULL,CUFF.40203.1
         (156 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g44630.1                                                        90   9e-19
Glyma15g00710.1                                                        87   6e-18
Glyma04g06800.1                                                        50   1e-06

>Glyma13g44630.1 
          Length = 238

 Score = 90.1 bits (222), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/183 (43%), Positives = 96/183 (52%), Gaps = 37/183 (20%)

Query: 1   MCDHDDWVNLAMADDSTVAGXX----XXXXXXXXXXXXWTVRQRRS-THKXXXXXXXXXX 55
           MCD D WV +AMADDS V                    WTVRQRRS +            
Sbjct: 1   MCD-DHWVKVAMADDSLVVDLLLRLHRSPPPPPCLNLHWTVRQRRSRSAHNKAESTRASP 59

Query: 56  XXXLSWSGAATSVSCGANNVDSHEEESSHLTKHAGASRSDKVANPSETVTTKKA------ 109
              LSWSGA TS S G  N+D +EE     +K +  SRS KVANPSET TT+K       
Sbjct: 60  TTPLSWSGA-TSASGG--NLDGYEE-----SKPSQTSRS-KVANPSETATTRKTRRKKTL 110

Query: 110 -------------RR--KKELASLRITVDQQIATNESLKKMKLDLDLRQNSN-TTTTSEV 153
                        RR  +KELASLR+T+ +  ATNES+K++KLD + RQNS+   T SEV
Sbjct: 111 TELKEEEDLLLKERRNLEKELASLRLTIQKHRATNESIKRLKLDFESRQNSSAAATASEV 170

Query: 154 SGK 156
           SGK
Sbjct: 171 SGK 173


>Glyma15g00710.1 
          Length = 248

 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/180 (43%), Positives = 92/180 (51%), Gaps = 33/180 (18%)

Query: 5   DDWVNLAMADDSTVA-----GXXXXXXXXXXXXXXWTVRQRRS-THKXXXXXXXXXXXXX 58
           D W+ +AMADDS V                     WTVRQRRS +               
Sbjct: 4   DHWIKVAMADDSLVVDLLLRLHRPPPPPPPCLNLHWTVRQRRSRSAHNKAESTRASPTTP 63

Query: 59  LSWSGAATSVSCGANNVDSHEEESSHLTKHAGASRSDKVANPSETVTTK----------- 107
           LSWSGA TS S G  N+D +EE  S  +K    SRS KVANPSET TT+           
Sbjct: 64  LSWSGA-TSASGG--NLDGYEE-YSRPSKPTQTSRS-KVANPSETTTTRKTRRKKTLAEL 118

Query: 108 --------KARR--KKELASLRITVDQQIATNESLKKMKLDLDLRQNSN-TTTTSEVSGK 156
                   K RR  KKELA LR+TV++  ATNES+K+ KLD + RQNS+   T SEVSGK
Sbjct: 119 KAEEDLLLKERRNLKKELAFLRLTVEKHRATNESIKRKKLDFESRQNSSAAATASEVSGK 178


>Glyma04g06800.1 
          Length = 254

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 46/190 (24%)

Query: 1   MCDHDDWVNLAMADDSTVA--------GXXXXXXXXXXXXXXWTVRQRRSTHKXXXXXXX 52
           M + D+WV  AMADD+ V         G              W V+Q RS  +       
Sbjct: 1   MVNEDEWVRAAMADDTVVVELLLRLKQGTVSHKSHHQLIPFSWGVKQPRSRSRLSAA--- 57

Query: 53  XXXXXXLSWSGAATSVSCGAN-------NVDSHEEESSHLTKHAGASRSDKVANPS-ETV 104
                 +S   AA S  C            DS+E+ S H   HA  S++   +  +  + 
Sbjct: 58  ------VSRCDAAVSTRCSPTTPLSWSAGTDSYEDSSRHHHHHAAISKATATSGYTGNSA 111

Query: 105 TTKKARRKKELASLR----------ITVDQQIAT-----------NESLKKMKLDLDLRQ 143
           +TK+ RRKK  A L+          I + ++IAT           NESLK+MKLD+ L+ 
Sbjct: 112 STKRCRRKKTFAELKEEESSLLKESIYLKKEIATVNANFEAQRAKNESLKRMKLDVGLKY 171

Query: 144 NSNTTTTSEV 153
           + N  +++ V
Sbjct: 172 HQNNPSSTSV 181