Miyakogusa Predicted Gene

Lj3g3v0012280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj3g3v0012280.1 tr|Q9ZUX6|Q9ZUX6_ARATH Nucleolar matrix
protein-related OS=Arabidopsis thaliana GN=At2g27750 PE=2
SV,47.76,2e-19,seg,NULL; SUBFAMILY NOT NAMED,NULL; SURFEIT LOCUS
PROTEIN 6,Surfeit locus 6; SURF6,Surfeit locus 6,gene.g44795.t1.1
         (169 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g15100.1                                                       132   2e-31
Glyma19g22310.1                                                        81   5e-16
Glyma19g22310.2                                                        57   9e-09

>Glyma05g15100.1 
          Length = 351

 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/150 (52%), Positives = 104/150 (69%), Gaps = 8/150 (5%)

Query: 19  KQREDRNVERGFQGNKRKRGNATDD--------LAVKVKKDAADTSKELVFGNVILQDEE 70
           ++R++RN  RG++  KRKR   T++         A KVKKDAA+ SK+LVFG+V LQ+EE
Sbjct: 154 RKRDERNARRGYKDKKRKRDEETEEGNPVRGELAAEKVKKDAAEASKDLVFGHVKLQNEE 213

Query: 71  IQGKKKIKVSXXXXXXXXXXXXXXXXXXXXXXXAFARKQSWEAALNRASGIKVHDDPKLV 130
           + GKKK KVS                       AFA+KQSW+AA++RASG+KVHDDPKL+
Sbjct: 214 MLGKKKRKVSKHKELERAKKLEEVKKKDPEKAEAFAKKQSWKAAMDRASGVKVHDDPKLL 273

Query: 131 QKSMKKEQKRREKNAEKWKERVQTRDQLKA 160
            KS+ KE+K+++KNAEKWK+R+QTRDQLKA
Sbjct: 274 HKSIHKEKKKQQKNAEKWKDRIQTRDQLKA 303


>Glyma19g22310.1 
          Length = 348

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 81/152 (53%), Gaps = 23/152 (15%)

Query: 19  KQREDRNVERGFQGNKRKRGNATDD-------LAV---KVKKDAADTSKELVFGNVILQD 68
           ++RE+RN  RG++ NKRKR   T++       LA    KVKKDAA+ SK+LVFG+V LQ+
Sbjct: 162 RKREERNARRGYKDNKRKRDGETEEGNPVRGELAAAEEKVKKDAAEASKDLVFGHVKLQN 221

Query: 69  EEIQGKKKIKVSXXXXXXXXXXXXXXXXXXXXXXXAFARKQSWEAALNRASGIKVHDDPK 128
           +E  GKKK KVS                       A  +    +       G+ +H    
Sbjct: 222 DE--GKKKRKVSKHQELERAKKLEEVKKKDPEKAEALLKSNHGKQQWIELQGLSIH---- 275

Query: 129 LVQKSMKKEQKRREKNAEKWKERVQTRDQLKA 160
                  KE+K++ KNAEKWK+RVQTRDQLKA
Sbjct: 276 -------KEKKKQLKNAEKWKDRVQTRDQLKA 300


>Glyma19g22310.2 
          Length = 292

 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 12/72 (16%)

Query: 19  KQREDRNVERGFQGNKRKRGNATDD-------LAV---KVKKDAADTSKELVFGNVILQD 68
           ++RE+RN  RG++ NKRKR   T++       LA    KVKKDAA+ SK+LVFG+V LQ+
Sbjct: 162 RKREERNARRGYKDNKRKRDGETEEGNPVRGELAAAEEKVKKDAAEASKDLVFGHVKLQN 221

Query: 69  EEIQGKKKIKVS 80
           +E  GKKK KVS
Sbjct: 222 DE--GKKKRKVS 231