Miyakogusa Predicted Gene

Lj2g3v3339640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3339640.1 tr|A9T5C3|A9T5C3_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,57.14,2e-16, ,CUFF.40108.1
         (119 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g00700.1                                                       167   3e-42
Glyma02g47900.1                                                       166   3e-42

>Glyma14g00700.1 
          Length = 126

 Score =  167 bits (422), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 92/119 (77%), Gaps = 4/119 (3%)

Query: 1   MATRVTLSSPLAFKTXXXXXXXXXXXXXXXXXXXKTNAVVGVRVHAKIGGSDEDTKKGEK 60
           MA ++TLSSP +FKT                   +TN V GV+VHAK+GG DE  KKG K
Sbjct: 12  MAAKLTLSSPFSFKTSFLPKSPSFSLGLYSP---RTN-VTGVKVHAKLGGGDEQAKKGGK 67

Query: 61  KKFITRDEEPQQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWIKVPVR 119
           KKFITR+EEPQQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWIKVPVR
Sbjct: 68  KKFITREEEPQQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWIKVPVR 126


>Glyma02g47900.1 
          Length = 126

 Score =  166 bits (421), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 92/119 (77%), Gaps = 4/119 (3%)

Query: 1   MATRVTLSSPLAFKTXXXXXXXXXXXXXXXXXXXKTNAVVGVRVHAKIGGSDEDTKKGEK 60
           MA ++TLSSPL+FKT                   +TN V GV+VHAK+GG DE  K G K
Sbjct: 12  MAAKLTLSSPLSFKTSFLPKSPSFSPGLCSP---RTN-VTGVKVHAKLGGGDEQAKNGGK 67

Query: 61  KKFITRDEEPQQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWIKVPVR 119
           KKFITR+EEPQQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWIKVPVR
Sbjct: 68  KKFITREEEPQQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWIKVPVR 126