Miyakogusa Predicted Gene

Lj2g3v3339580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3339580.1 tr|B9IAT9|B9IAT9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_775162 PE=4
SV=1,36.64,1e-18,seg,NULL,CUFF.40103.1
         (232 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g11230.1                                                        84   1e-16

>Glyma13g11230.1 
          Length = 253

 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/254 (34%), Positives = 124/254 (48%), Gaps = 35/254 (13%)

Query: 1   MLSCLCLFKNI------WMLL-LALLLPFSRYLLIIGFGFFSVICTAIVVIFLSTSVLLY 53
           +LSC C+F+NI      W+ + LALLL FS Y L+ GF FFS +    + + LST +L++
Sbjct: 13  LLSCFCIFRNITIFTPSWITVPLALLLLFSSYKLV-GFMFFSSLLFTSLALLLSTFLLIF 71

Query: 54  SVSKHRALQHVHKLVEEKVLISSQGSDK-----RENKIA-PTTPLELEVVNVDGVPSNYS 107
              KH+A+ +         ++S+  S++     RE+ +A   TP+      V        
Sbjct: 72  W--KHKAVPNDELAEGNGFILSTTTSEEKISHGRESAVAIAPTPMHKNAETV-------V 122

Query: 108 TTTSAPDLLSESKCQDQ-LWSSENSEVDY----HCLDFXXXXXXXXXXXXXXXXPGGHYV 162
           T     + +S+ KCQ++ L+ S + EVD+     C D                 P GH+V
Sbjct: 123 TQAKESEEVSDDKCQEEGLFLSTSEEVDHTLSDECSD---GTISDEDSLIEIALPSGHFV 179

Query: 163 DHDHQK-DHESK-NNYCSLQQKKKELSA--EALFNQQCLMXXXXXXXXXXXXXXXXXXXX 218
            H+  K D  SK NN C+LQQKK+ELS+  EALFNQ  LM                    
Sbjct: 180 GHNQNKEDSNSKYNNCCTLQQKKRELSSAHEALFNQHSLMEFLAEFNEMNEEDNLIEIDI 239

Query: 219 XMGSIKYSRFGIKA 232
            MGSIK SRF I+A
Sbjct: 240 AMGSIKCSRFEIEA 253