Miyakogusa Predicted Gene

Lj2g3v3337340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3337340.1 Non Chatacterized Hit- tr|C0PDX0|C0PDX0_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,43.4,8e-19,no
description,NULL; A Receptor for Ubiquitination Targets,F-box domain,
cyclin-like; SUBFAMILY NOT ,gene.g44622.t1.1
         (159 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g47500.1                                                       195   1e-50
Glyma14g01260.1                                                       187   3e-48
Glyma10g03100.1                                                        63   1e-10
Glyma02g16700.1                                                        62   2e-10
Glyma17g35610.1                                                        59   2e-09
Glyma14g09560.1                                                        58   4e-09
Glyma03g30900.1                                                        55   3e-08
Glyma06g04640.1                                                        55   3e-08
Glyma04g04540.1                                                        54   5e-08
Glyma19g33720.1                                                        53   1e-07

>Glyma02g47500.1 
          Length = 154

 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/156 (66%), Positives = 111/156 (71%), Gaps = 5/156 (3%)

Query: 2   QVQDTRRNKRHNNFSINDNIDILREVLKRLDGPSLGVAACVCRLWRSLASSDDSLWEHLC 61
           Q Q     ++   F INDNIDILRE+LKRLDGPSLGVAACVCRLW SL S+DDSLWEHLC
Sbjct: 4   QQQHRVEQEKRPRFFINDNIDILREILKRLDGPSLGVAACVCRLWCSLTSNDDSLWEHLC 63

Query: 62  FRHVSSPPPDSVRAVVVALGGYRRLYMVCVRPVLSRLGDSXXXXXXXXXXXXXQLSLSLF 121
           FRHVSSPPP SV+AVVVALGGY+RLYMVCVRPVLSRLGDS             QLSLSLF
Sbjct: 64  FRHVSSPPPASVKAVVVALGGYKRLYMVCVRPVLSRLGDSERVRKRVWTRHEVQLSLSLF 123

Query: 122 CVDSYERLXXXXXXXXXXXXXXXXXXLMFLCNPINV 157
           C+DSYERL                  LMFLCN +NV
Sbjct: 124 CIDSYERL-----GSGRIPSDASASSLMFLCNSVNV 154


>Glyma14g01260.1 
          Length = 154

 Score =  187 bits (476), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 99/143 (69%), Positives = 105/143 (73%), Gaps = 5/143 (3%)

Query: 15  FSINDNIDILREVLKRLDGPSLGVAACVCRLWRSLASSDDSLWEHLCFRHVSSPPPDSVR 74
           F INDNIDILRE+LKRLDGPSLGVAACVCRLW SL  +DDSLWEHLCFRHVSSPP  SVR
Sbjct: 17  FFINDNIDILREILKRLDGPSLGVAACVCRLWCSLTRNDDSLWEHLCFRHVSSPPTASVR 76

Query: 75  AVVVALGGYRRLYMVCVRPVLSRLGDSXXXXXXXXXXXXXQLSLSLFCVDSYERLXXXXX 134
           AVVVALGGY+RLYMVCVRPVLSRLG+S             QLSLSLFC+DSYERL     
Sbjct: 77  AVVVALGGYKRLYMVCVRPVLSRLGNSERVRKRVWTRHEVQLSLSLFCIDSYERL----- 131

Query: 135 XXXXXXXXXXXXXLMFLCNPINV 157
                        LMFLCN +NV
Sbjct: 132 ESGRIPSDASASSLMFLCNTVNV 154


>Glyma10g03100.1 
          Length = 346

 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 20  NIDILREVLKRLDGPSLGVAACVCRLWRSLASSDDSLWEHLCFRHVSSPPPDSVRAVVVA 79
           N D+L ++L+RLDGP+L  AAC C  + S+ S ++SLWE++C     S   + V++++ +
Sbjct: 13  NSDLLYDILRRLDGPTLASAACTCASFSSI-SKEESLWENVCSSVWPSTNREDVKSLISS 71

Query: 80  LGGYRRLYMVCVRPVLSR-LGD 100
            GG+R+ Y  C   ++++ +GD
Sbjct: 72  TGGFRKFYADCFPLIINKEVGD 93


>Glyma02g16700.1 
          Length = 373

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 22 DILREVLKRLDGPSLGVAACVCRLWRSLASSDDSLWEHLCFRHVSSPPPDSVRAVVVALG 81
          D+  ++L+RLDGP+L  AAC C  + S+ S ++SLWE++C     S   + V++++ ++G
Sbjct: 15 DLFYDILRRLDGPTLASAACTCASFSSI-SKEESLWENVCSSVWPSTNREDVKSLISSIG 73

Query: 82 GYRRLYMVCVRPVLSR 97
          GYR+ Y  C   ++++
Sbjct: 74 GYRKFYADCFPLIVNK 89


>Glyma17g35610.1 
          Length = 174

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 5/93 (5%)

Query: 4   QDTRRNKRHNNFSINDNIDILREVLKRLDGPSLGVAACVCRLWRSLASSDDSLWEHLCFR 63
           ++     R  +  ++DN+  L EVLK +D  SL +A CV + W+  A+ D+ LWE +C +
Sbjct: 28  EEEEHGTRGGSVYLDDNV--LFEVLKHVDARSLAMAGCVSKQWQK-AARDERLWELICTK 84

Query: 64  HVSSP--PPDSVRAVVVALGGYRRLYMVCVRPV 94
             ++       +R+VV+ALGG+RRL+ + + P+
Sbjct: 85  QWANTGCGEQQLRSVVLALGGFRRLHALYLWPL 117


>Glyma14g09560.1 
          Length = 144

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 9/129 (6%)

Query: 3   VQDTRRNKRHNNFSINDNIDILREVLKRLDGPSLGVAACVCRLWRSLASSDDSLWEHLCF 62
           +++     R  +  ++DN+  L EVL+ +D  SL +A CV + W+ +A  D+ LWE +C 
Sbjct: 13  IKEEEDETRGGSVYLDDNV--LSEVLRHVDARSLAMAGCVSKQWQKMA-RDERLWELICT 69

Query: 63  RHV--SSPPPDSVRAVVVALGGYRRLYMVCVRPVLSRLGDSXXXXXXXXXXXXXQLSLSL 120
           +    +      +R++++ALGG+RRL+ + + P    L                 LSLSL
Sbjct: 70  KQWVNTGCAEQQLRSLILALGGFRRLHALYLWP----LSKPHAPPKPLWGKDEVHLSLSL 125

Query: 121 FCVDSYERL 129
             +  +E++
Sbjct: 126 LSIRYFEKM 134


>Glyma03g30900.1 
          Length = 373

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 20 NIDILREVLKRLDGPSLGVAACVCRLWRSLASSDDSLWEHLCFRHVSSPPPDSVRAVVVA 79
          N D+  ++ +RLDG +L  AAC C    S+ S ++SLWE++C     S   + V++++ +
Sbjct: 13 NSDLFYDIFRRLDGATLASAACTCAALCSI-SKEESLWENVCSSMWPSTNREDVKSLISS 71

Query: 80 LGGYRRLYMVCVRPVLSR 97
          +GG+R+ Y  C   ++++
Sbjct: 72 VGGFRKFYADCFPLIVNK 89


>Glyma06g04640.1 
          Length = 174

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 22  DILREVLKRLDGPSLGVAACVCRLWRSLASSDDSLWEHLCFRHVSSP--PPDSVRAVVVA 79
           ++L EVLK +D  +L +A CV + W   A  D+ LWE +C +  ++       +R+VV+A
Sbjct: 36  NLLFEVLKHVDARTLAMAGCVNKQWHKTA-QDERLWELICTKQWANTGCGEQQLRSVVLA 94

Query: 80  LGGYRRLYMVCVRPV 94
           LGG+RRL+ + + P+
Sbjct: 95  LGGFRRLHALYLFPL 109


>Glyma04g04540.1 
          Length = 238

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 22  DILREVLKRLDGPSLGVAACVCRLWRSLASSDDSLWEHLCFRHVSSP--PPDSVRAVVVA 79
           ++L EVLK +D  +L ++ CV + W   A  D+ LWE +C +  ++       +R+VV+A
Sbjct: 100 NLLFEVLKHVDARTLAMSGCVNKQWHKTA-QDERLWELICTKQWANTGCGEQQLRSVVLA 158

Query: 80  LGGYRRLYMVCVRPV 94
           LGG+RRL+ + + P+
Sbjct: 159 LGGFRRLHALYLFPL 173


>Glyma19g33720.1 
          Length = 375

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 22 DILREVLKRLDGPSLGVAACVCRLWRSLASSDDSLWEHLCFRHVSSPPPDSVRAVVVALG 81
          D+  ++ +RLDG +L  AAC C    S+ S +++LWE++C     S   + V++++ ++G
Sbjct: 15 DLFYDIFRRLDGATLASAACTCAALCSI-SKEENLWENVCSSMWPSTNREDVKSLISSIG 73

Query: 82 GYRRLYMVCVRPVLSR 97
          G+R+ Y  C   ++++
Sbjct: 74 GFRKFYADCFPLIVNK 89