Miyakogusa Predicted Gene

Lj2g3v3247910.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3247910.2 tr|Q9FM80|Q9FM80_ARATH Mitochondrial
transcription termination factor family protein OS=Arabidopsis
,42.35,2e-17,seg,NULL,CUFF.39927.2
         (199 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g46750.1                                                       177   8e-45
Glyma14g01940.1                                                       147   5e-36

>Glyma02g46750.1 
          Length = 503

 Score =  177 bits (448), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 108/218 (49%), Positives = 128/218 (58%), Gaps = 25/218 (11%)

Query: 3   ATIHSLYPYNPFFHIXXXXXXXXXXXXXFRR--GS----KLVVLAAHSNPKILKTNRMSK 56
           A I  LYPYNP  +               RR  GS     LV LAAHSNP+ILK+NR SK
Sbjct: 2   AAILPLYPYNPLLYFSTPSSFRSQFWILERRRLGSASLKNLVKLAAHSNPRILKSNRKSK 61

Query: 57  YGRALSMYXXXXXXXXXXXXXXXXXXXXXXXXXXXFAEPADLDVNN-KRRKSRTVA---- 111
           YG AL  Y                           F+EPA+LDVNN KR KS+T      
Sbjct: 62  YGEALLFYDSDEEMDDDVSDDDEDDDWLSDEE---FSEPANLDVNNNKRFKSKTTKGMLE 118

Query: 112 -----------ERNREREKERGLRSFDDGQSNRMPKSERLASFQQNDSGKFGRNSKEKKY 160
                       ++R++E E GLRSFD+ QS R+P+SER+AS Q+N+SGK  RN K+KKY
Sbjct: 119 RVLLMISFKGDRKDRQQEWEWGLRSFDNKQSIRLPRSERVASLQRNESGKHSRNVKDKKY 178

Query: 161 PRLSEEIVMDVKWLPLLDYLSTFEIKESHFLQMYERHM 198
           PRLSEEI +DVKWLPLLDYLSTF +KESHF+QMYER M
Sbjct: 179 PRLSEEIPLDVKWLPLLDYLSTFGMKESHFVQMYERRM 216


>Glyma14g01940.1 
          Length = 476

 Score =  147 bits (372), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/208 (43%), Positives = 112/208 (53%), Gaps = 32/208 (15%)

Query: 3   ATIHSLYPYNP--FFHIXXXXXXXXXXXXXFRRGS----KLVVLAAHSNPKILKTNRMSK 56
           A +  LYPYNP  +F                R GS     LV LAAHSNP+ILK+NR SK
Sbjct: 2   AAVMPLYPYNPMLYFSTPSSFCSQFWILERERLGSARLKNLVKLAAHSNPRILKSNRKSK 61

Query: 57  YGRALSMYXXXXXXXXXXXXXXXXXXXXXXXXXXXFAEPADLDVNNKRRKSRTVAERNRE 116
           YG ALS+Y                                                 + +
Sbjct: 62  YGEALSLYDSDEDDEELDDDDNEDDDDDWLSDVSFVI--------------------SLQ 101

Query: 117 REKERGLRSFDDGQSNRMPKSERLASFQQNDSGKF------GRNSKEKKYPRLSEEIVMD 170
           +E+E GLRSFD+ QS R+P+SER+A+ Q+N+SGK        RN K+KKYP+LSEEI +D
Sbjct: 102 QEREWGLRSFDNEQSIRLPRSERVATLQRNESGKLPNRDTHSRNVKDKKYPQLSEEIPLD 161

Query: 171 VKWLPLLDYLSTFEIKESHFLQMYERHM 198
           VKWLPLLDYLSTF +KESHF+QMYER M
Sbjct: 162 VKWLPLLDYLSTFGMKESHFVQMYERRM 189