Miyakogusa Predicted Gene

Lj2g3v3209580.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3209580.2 Non Chatacterized Hit- tr|B4FN51|B4FN51_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,71.01,3e-19,GrpE,GrpE
nucleotide exchange factor; GRPE PROTEIN, MITOCHONDRIAL,NULL; GRPE
PROTEIN,GrpE nucleotide,CUFF.39870.2
         (192 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g46390.3                                                       179   1e-45
Glyma02g46390.1                                                       171   4e-43
Glyma02g46390.2                                                       171   4e-43
Glyma18g10120.1                                                       135   2e-32
Glyma08g43430.1                                                       134   9e-32
Glyma18g39460.1                                                        62   3e-10

>Glyma02g46390.3 
          Length = 309

 Score =  179 bits (455), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 102/201 (50%), Positives = 119/201 (59%), Gaps = 13/201 (6%)

Query: 1   MFVNKLLTRISRTVSRTSLLSASQRPQQF--------HSLLPQSPNKLISAQANLLCPTI 52
           MF +++L+R+S  + RTSLLSASQ PQ          HSLLP SPNK+I  Q NLL P I
Sbjct: 1   MFFHRVLSRVSTNICRTSLLSASQTPQHLSSFANINLHSLLPHSPNKVIPVQLNLLLPPI 60

Query: 53  SSLT-PRFGFSSSPXXXXXXXXXXXHQHNGSSSTDDPIKTSEEAKKVDQDGQAKPVXXXX 111
           +SL+ PRFGFSSS            + HNG S+  DP K +EEAK  DQ  Q KP     
Sbjct: 61  NSLSAPRFGFSSSASTENNDKKNRNNVHNGDSTNADPAKANEEAKNNDQARQDKPADKTE 120

Query: 112 XXXXXXXXXXXCDLSREDLIXXXXXXXXXXXXXXXXXXXMHDKVLRTYAEMENIKDRTRR 171
                      CDLSR+DLI                   M DKVLRTYAEMEN+ +RTRR
Sbjct: 121 ESDSESE----CDLSRDDLIKLVAEKEELVMLKHKEIEKMQDKVLRTYAEMENVMERTRR 176

Query: 172 EAENSKKFAIQNFAKSLLDVA 192
           EA+NSKKFA+QNFAKSLLDVA
Sbjct: 177 EADNSKKFALQNFAKSLLDVA 197


>Glyma02g46390.1 
          Length = 335

 Score =  171 bits (433), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/223 (45%), Positives = 119/223 (53%), Gaps = 31/223 (13%)

Query: 1   MFVNKLLTRISRTVSRTSLLSASQRPQQF--------HSLLPQSPNKLISAQANLLCPTI 52
           MF +++L+R+S  + RTSLLSASQ PQ          HSLLP SPNK+I  Q NLL P I
Sbjct: 1   MFFHRVLSRVSTNICRTSLLSASQTPQHLSSFANINLHSLLPHSPNKVIPVQLNLLLPPI 60

Query: 53  SSLT-PRFGFSSSPXXXXXXXXXXXHQHNGSSSTDDPIKTSEEAKKVDQDGQAKPVXXXX 111
           +SL+ PRFGFSSS            + HNG S+  DP K +EEAK  DQ  Q KP     
Sbjct: 61  NSLSAPRFGFSSSASTENNDKKNRNNVHNGDSTNADPAKANEEAKNNDQARQDKPADKTE 120

Query: 112 XXXX----------------------XXXXXXXCDLSREDLIXXXXXXXXXXXXXXXXXX 149
                                            CDLSR+DLI                  
Sbjct: 121 ESGSISDSQSQTVKRRRRGFKRTAFSDSDSESECDLSRDDLIKLVAEKEELVMLKHKEIE 180

Query: 150 XMHDKVLRTYAEMENIKDRTRREAENSKKFAIQNFAKSLLDVA 192
            M DKVLRTYAEMEN+ +RTRREA+NSKKFA+QNFAKSLLDVA
Sbjct: 181 KMQDKVLRTYAEMENVMERTRREADNSKKFALQNFAKSLLDVA 223


>Glyma02g46390.2 
          Length = 319

 Score =  171 bits (433), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/211 (48%), Positives = 119/211 (56%), Gaps = 23/211 (10%)

Query: 1   MFVNKLLTRISRTVSRTSLLSASQRPQQF--------HSLLPQSPNKL----------IS 42
           MF +++L+R+S  + RTSLLSASQ PQ          HSLLP SPNK+          I 
Sbjct: 1   MFFHRVLSRVSTNICRTSLLSASQTPQHLSSFANINLHSLLPHSPNKVLGISILVNKVIP 60

Query: 43  AQANLLCPTISSLT-PRFGFSSSPXXXXXXXXXXXHQHNGSSSTDDPIKTSEEAKKVDQD 101
            Q NLL P I+SL+ PRFGFSSS            + HNG S+  DP K +EEAK  DQ 
Sbjct: 61  VQLNLLLPPINSLSAPRFGFSSSASTENNDKKNRNNVHNGDSTNADPAKANEEAKNNDQA 120

Query: 102 GQAKPVXXXXXXXXXXXXXXXCDLSREDLIXXXXXXXXXXXXXXXXXXXMHDKVLRTYAE 161
            Q KP                CDLSR+DLI                   M DKVLRTYAE
Sbjct: 121 RQDKPADKTEESDSESE----CDLSRDDLIKLVAEKEELVMLKHKEIEKMQDKVLRTYAE 176

Query: 162 MENIKDRTRREAENSKKFAIQNFAKSLLDVA 192
           MEN+ +RTRREA+NSKKFA+QNFAKSLLDVA
Sbjct: 177 MENVMERTRREADNSKKFALQNFAKSLLDVA 207


>Glyma18g10120.1 
          Length = 290

 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/201 (45%), Positives = 105/201 (52%), Gaps = 37/201 (18%)

Query: 1   MFVNKLLTRISRTVSRT-SLLSASQRPQ--------QFHSLLPQSPNKLISAQANLLCPT 51
           MF  ++L+R S  +SR+ +L S S+  Q         FHSLL  SPNK+I  Q N L   
Sbjct: 1   MFAYRVLSRSSAILSRSFTLFSVSRNSQPFSTTLSNNFHSLLHPSPNKVIPVQTNFLN-- 58

Query: 52  ISSLTPRFGFSSSPXXXXXXXXXXXHQHNGSSSTDDPIKTSEEAKKVDQDGQAKPVXXXX 111
            SSLT RFGFSS+            H+H            SEEAK  DQ  QA+      
Sbjct: 59  -SSLTSRFGFSST----------ASHEH-----------ASEEAKVSDQSEQAEAADQTK 96

Query: 112 XXXXXXXXXXXCDLSREDLIXXXXXXXXXXXXXXXXXXXMHDKVLRTYAEMENIKDRTRR 171
                      CDLSR+DLI                   M DKVLRTYAEMEN+ DRTRR
Sbjct: 97  ESGVESE----CDLSRDDLIKLVAEKEQLLKLKHKEIEKMQDKVLRTYAEMENVMDRTRR 152

Query: 172 EAENSKKFAIQNFAKSLLDVA 192
           EAENSKKFAIQNFAKSLLDVA
Sbjct: 153 EAENSKKFAIQNFAKSLLDVA 173


>Glyma08g43430.1 
          Length = 289

 Score =  134 bits (336), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 104/201 (51%), Gaps = 34/201 (16%)

Query: 1   MFVNKLLTRISRTVSRT-SLLSASQRPQ--------QFHSLLPQSPNKLISAQANLLCPT 51
           MF  ++L+R S T+SR+ +L S S+  Q         F+SLL  SPNKLI  Q N L   
Sbjct: 1   MFAYRVLSRSSATLSRSFTLFSVSRNSQPFSTNLSNNFNSLLHPSPNKLIPVQTNFLNSM 60

Query: 52  ISSLTPRFGFSSSPXXXXXXXXXXXHQHNGSSSTDDPIKTSEEAKKVDQDGQAKPVXXXX 111
             SLT RFGFSS+            H+H            SE AK  DQ  QA+      
Sbjct: 61  NPSLTSRFGFSST----------ASHEH-----------ASEGAKVSDQSEQAEAADQTK 99

Query: 112 XXXXXXXXXXXCDLSREDLIXXXXXXXXXXXXXXXXXXXMHDKVLRTYAEMENIKDRTRR 171
                      CDLSR+DLI                   M DKVLRTYAEMEN+ DRTRR
Sbjct: 100 ESDVEIE----CDLSRDDLIKLVAEKEQLLKLKHKEIEKMQDKVLRTYAEMENVMDRTRR 155

Query: 172 EAENSKKFAIQNFAKSLLDVA 192
           EAENSKKFAIQNFAKSLLDVA
Sbjct: 156 EAENSKKFAIQNFAKSLLDVA 176


>Glyma18g39460.1 
          Length = 184

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 75/184 (40%), Gaps = 58/184 (31%)

Query: 13  TVSRTSLLSASQRPQQFHSLLPQSPNKLISAQANLLCPTISSLTPRFGFSSSPXXXXXXX 72
           +VSR S   ++     FHSLL  SPNKLI  Q N L    SSLT RFGFSS         
Sbjct: 7   SVSRNSQPFSTTLSNNFHSLLHPSPNKLIPLQTNFLN---SSLTSRFGFSS--------- 54

Query: 73  XXXXHQHNGSSSTDDPIKTSEEAKKVDQDGQAKPVXXXXXXXXXXXXXXXCDLSREDLIX 132
               H+H            SEEAK  DQ  QA+ V               CDLSR+DLI 
Sbjct: 55  -IASHEH-----------ASEEAKVSDQSEQAEAV----DQTKESDVESECDLSRDDLI- 97

Query: 133 XXXXXXXXXXXXXXXXXXMHDKVLRTYAEMENIKDRTRREAENSKKFAI-----QNFAKS 187
                                   +   E E +     +E E  +++ +     +NFAKS
Sbjct: 98  ------------------------KLVVEKEQLLKLKHKEIEKMQRWRMSWIGQENFAKS 133

Query: 188 LLDV 191
           LLDV
Sbjct: 134 LLDV 137