Miyakogusa Predicted Gene

Lj2g3v3184230.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3184230.2 Non Chatacterized Hit- tr|D7LB00|D7LB00_ARALL
Putative uncharacterized protein OS=Arabidopsis lyrata,76.27,7e-19,DNA
repair protein MutS, domain III,DNA mismatch repair protein MutS,
core; MutS_III,DNA mismatch re,CUFF.39832.2
         (67 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g46180.1                                                       120   3e-28
Glyma09g32150.1                                                        53   9e-08
Glyma07g09660.1                                                        52   1e-07

>Glyma02g46180.1 
          Length = 823

 Score =  120 bits (301), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/59 (96%), Positives = 58/59 (98%)

Query: 9   QCVTPMGRRLLRNWFLRPILDLEVLNYRLNSISFFLCSEELVVSLRETLKSVKDIPHLL 67
           +CVTPMGRRLLRNWFLRPILDLEVLNYRLNSISFFLCSEELV SLRETLKSVKDIPHLL
Sbjct: 235 KCVTPMGRRLLRNWFLRPILDLEVLNYRLNSISFFLCSEELVASLRETLKSVKDIPHLL 293


>Glyma09g32150.1 
          Length = 1093

 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 39/59 (66%)

Query: 9   QCVTPMGRRLLRNWFLRPILDLEVLNYRLNSISFFLCSEELVVSLRETLKSVKDIPHLL 67
           +CVT  G+RLLRNW   P++D E++N RL+ +   + + E+V  + + L+ + D+ HLL
Sbjct: 539 KCVTSSGKRLLRNWICCPLVDAEIINNRLDIVDDLMANPEIVSHIAQHLRRLPDLEHLL 597


>Glyma07g09660.1 
          Length = 1053

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 39/59 (66%)

Query: 9   QCVTPMGRRLLRNWFLRPILDLEVLNYRLNSISFFLCSEELVVSLRETLKSVKDIPHLL 67
           +CVT  G+RLLRNW   P++D E++N RL+ +   + + E+V  + + L+ + D+ HLL
Sbjct: 536 KCVTSSGKRLLRNWICCPLIDPEIINKRLDVVDDLMANPEIVPHIAQHLRRLPDLEHLL 594