Miyakogusa Predicted Gene

Lj2g3v3109510.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3109510.1 Non Chatacterized Hit- tr|F6HNZ6|F6HNZ6_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,74.24,7e-17,seg,NULL; PRICHEXTENSN,NULL,CUFF.39755.1
         (447 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g12670.1                                                        59   7e-09
Glyma08g42260.1                                                        59   1e-08
Glyma08g42260.2                                                        59   1e-08
Glyma02g45690.1                                                        53   7e-07

>Glyma18g12670.1 
          Length = 270

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/48 (62%), Positives = 39/48 (81%), Gaps = 2/48 (4%)

Query: 1  MERKGSNFAFLTMFTLLAGLLSKNIVITAIASTSIEDQKNYYTPDPNA 48
          MERK S+ +F TMF +L GLLS+++VI  I ST++ DQKNYYTPDP+A
Sbjct: 1  MERKRSHASF-TMFAMLVGLLSQSLVIPVI-STTVADQKNYYTPDPHA 46


>Glyma08g42260.1 
          Length = 272

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 40/48 (83%), Gaps = 2/48 (4%)

Query: 1  MERKGSNFAFLTMFTLLAGLLSKNIVITAIASTSIEDQKNYYTPDPNA 48
          MERK S+ +F TMF +L G++S+++VI  + ST++EDQKNYYTPDP+A
Sbjct: 1  MERKRSHASF-TMFAMLVGVISQSLVI-PVVSTTVEDQKNYYTPDPHA 46


>Glyma08g42260.2 
          Length = 266

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 40/48 (83%), Gaps = 2/48 (4%)

Query: 1  MERKGSNFAFLTMFTLLAGLLSKNIVITAIASTSIEDQKNYYTPDPNA 48
          MERK S+ +F TMF +L G++S+++VI  + ST++EDQKNYYTPDP+A
Sbjct: 1  MERKRSHASF-TMFAMLVGVISQSLVI-PVVSTTVEDQKNYYTPDPHA 46


>Glyma02g45690.1 
          Length = 451

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/29 (86%), Positives = 28/29 (96%), Gaps = 1/29 (3%)

Query: 398 GTPTI-STPPFLPAPSPFTGTCNYWNTHP 425
           GTPTI STPP+LP+P+PFTGTCNYWNTHP
Sbjct: 320 GTPTIPSTPPYLPSPTPFTGTCNYWNTHP 348