Miyakogusa Predicted Gene

Lj2g3v3085360.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3085360.2 tr|G7KD27|G7KD27_MEDTR Ribosomal RNA small
subunit methyltransferase B OS=Medicago truncatula
GN=MTR,81.52,0,NOL1_NOP2_SUN,Bacterial Fmu (Sun)/eukaryotic nucleolar
NOL1/Nop2p, conserved site; PUA,Pseudouridine,CUFF.39691.2
         (610 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g03400.1                                                       682   0.0  
Glyma18g08310.1                                                        67   8e-11
Glyma08g44490.1                                                        65   2e-10
Glyma08g44490.2                                                        65   2e-10
Glyma02g47060.1                                                        62   1e-09
Glyma14g01690.1                                                        62   3e-09
Glyma06g05730.1                                                        61   4e-09
Glyma04g05710.1                                                        60   5e-09
Glyma06g05730.2                                                        52   2e-06

>Glyma14g03400.1 
          Length = 381

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/420 (79%), Positives = 359/420 (85%), Gaps = 39/420 (9%)

Query: 191 VACSAHVEEGDTVAVSVAVEQQGSSGGWSAGMTRGTVLQGSQTDPYYTERSGLYIGQGVA 250
           +ACSAHVE+GDTVAVSVAVE+QG+ GGW   MTRGTVLQGS+TDPYY ER+GLYIGQG A
Sbjct: 1   MACSAHVEKGDTVAVSVAVEKQGADGGWGIAMTRGTVLQGSETDPYYFERNGLYIGQGTA 60

Query: 251 MLSRAGMFRVPQGVGVDMKDRVYDLPSFHSVLEGDIFLQNLPSIIAAHALDPQMGERILD 310
           MLSRAGMFRV +GVGVDMKDRVY+L SFH+VLEG+IFLQNLPSIIAAHALDPQ GERILD
Sbjct: 61  MLSRAGMFRVSEGVGVDMKDRVYELHSFHNVLEGEIFLQNLPSIIAAHALDPQKGERILD 120

Query: 311 MCAAPGGKTTAIAILMKDKGEVIATDRSHNKVLDIQKLAAELGLSCIKAFRLDAVKSVCQ 370
           MCAAPGGKTTAIAILMKD+GE+IATDRSHNKVLDIQKLAAE+GLSCIK F+LDA+KSVC+
Sbjct: 121 MCAAPGGKTTAIAILMKDEGEIIATDRSHNKVLDIQKLAAEMGLSCIKTFKLDALKSVCR 180

Query: 371 RNDIDTLTDPCCNNANNGVASQEFSSPHLQVERMQPLVTESLKTETQEENDNGEKANGRA 430
           R+DIDT TDPC                                         G+K NG A
Sbjct: 181 RDDIDTFTDPCYK---------------------------------------GKKPNGGA 201

Query: 431 YQSKADIRKNMRRARNGPGRNQSVGGQVDSSKGFSPGSFDRVLLDAPCSALGLRPRLFAG 490
           Y SKADIRKNMRRARNGPGRNQ VGG+VD SKGFSP SFDRVLLDAPCSALGLRPRLFAG
Sbjct: 202 YVSKADIRKNMRRARNGPGRNQCVGGRVDRSKGFSPDSFDRVLLDAPCSALGLRPRLFAG 261

Query: 491 EETIESLRSHAKYQRKMFDQAVQLARPGGVIVYSTCTINPGENEALVRYALDKYKYLSLA 550
           EETI+SLR+HAKYQR+MFDQAVQL RPGG+IVYSTCTINPGENEALVRYALDKYKYLSLA
Sbjct: 262 EETIQSLRNHAKYQRRMFDQAVQLVRPGGIIVYSTCTINPGENEALVRYALDKYKYLSLA 321

Query: 551 PQHPRIGGPGLVGSFEFPDGYVDEWLRPGEEDLVQRFDPSSPLDTIGFFIAKFAVGSKDT 610
           PQHPRIGGPGLVGS EFPDGY++EWLRPGEEDLVQRFDPSSPLDTIGFFIAKF VGSKDT
Sbjct: 322 PQHPRIGGPGLVGSCEFPDGYIEEWLRPGEEDLVQRFDPSSPLDTIGFFIAKFLVGSKDT 381


>Glyma18g08310.1 
          Length = 620

 Score = 66.6 bits (161), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 16/140 (11%)

Query: 470 DRVLLDAPCSALGL--RPRLFAGEETIESLRSHAKYQRKMFDQAVQL----ARPGGVIVY 523
           DRVLLDAPCS  G+  +       +++E ++  A  Q+++   A+ +    ++ GG IVY
Sbjct: 376 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKELILAAIDMVDANSKSGGYIVY 435

Query: 524 STCTINPGENEALVRYALDKYKYLSLAPQHPRIGGPGLVGSFEFPDGYVDEWLRPGEEDL 583
           STC+I   ENEA++ YAL K + + L P     G PG          + ++   P  E  
Sbjct: 436 STCSIMVAENEAVIDYALKK-RDVKLVPCGLDFGRPGFT-------RFREQRFHPSLEK- 486

Query: 584 VQRFDPSSPLDTIGFFIAKF 603
            +RF P    +  GFF+AK 
Sbjct: 487 TRRFYPHVQ-NMDGFFVAKL 505



 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 35/55 (63%)

Query: 282 LEGDIFLQNLPSIIAAHALDPQMGERILDMCAAPGGKTTAIAILMKDKGEVIATD 336
           + G   LQ+  S +   AL PQ  ER++DM AAPGGKTT IA LMK+ G + A +
Sbjct: 281 MAGFYMLQSASSFLPVMALAPQEKERVIDMGAAPGGKTTYIAALMKNTGIIFANE 335


>Glyma08g44490.1 
          Length = 614

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 16/143 (11%)

Query: 467 GSFDRVLLDAPCSALGL--RPRLFAGEETIESLRSHAKYQRKMFDQAVQL----ARPGGV 520
            + DRVLLDAPCS  G+  +       +++E ++  A  Q+++   A+ +    ++ GG 
Sbjct: 369 NAVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKELILAAIDMVDANSKSGGY 428

Query: 521 IVYSTCTINPGENEALVRYALDKYKYLSLAPQHPRIGGPGLVGSFEFPDGYVDEWLRPGE 580
           +VYSTC+I   ENE+++ YAL K + + L P     G PG          + ++   P  
Sbjct: 429 VVYSTCSIMVAENESVIDYALKK-RDVKLVPCGLDFGRPGFT-------KFREQRFHPSL 480

Query: 581 EDLVQRFDPSSPLDTIGFFIAKF 603
           E   +RF P    +  GFF+AK 
Sbjct: 481 EK-TRRFYPHVQ-NMDGFFVAKL 501



 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 282 LEGDIFLQNLPSIIAAHALDPQMGERILDMCAAPGGKTTAIAILMKDKGEVIATDRSHNK 341
           + G   LQ+  S +   AL PQ  ER++DM AAPGGKTT IA LMK+ G + A +    K
Sbjct: 277 MAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTGIIFANEM---K 333

Query: 342 VLDIQKLAAEL 352
           V  ++ L A L
Sbjct: 334 VPRLKSLTANL 344


>Glyma08g44490.2 
          Length = 608

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 16/143 (11%)

Query: 467 GSFDRVLLDAPCSALGL--RPRLFAGEETIESLRSHAKYQRKMFDQAVQL----ARPGGV 520
            + DRVLLDAPCS  G+  +       +++E ++  A  Q+++   A+ +    ++ GG 
Sbjct: 382 NAVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKELILAAIDMVDANSKSGGY 441

Query: 521 IVYSTCTINPGENEALVRYALDKYKYLSLAPQHPRIGGPGLVGSFEFPDGYVDEWLRPGE 580
           +VYSTC+I   ENE+++ YAL K + + L P     G PG          + ++   P  
Sbjct: 442 VVYSTCSIMVAENESVIDYALKK-RDVKLVPCGLDFGRPGFT-------KFREQRFHPSL 493

Query: 581 EDLVQRFDPSSPLDTIGFFIAKF 603
           E   +RF P    +  GFF+AK 
Sbjct: 494 EK-TRRFYPHVQ-NMDGFFVAKL 514



 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 282 LEGDIFLQNLPSIIAAHALDPQMGERILDMCAAPGGKTTAIAILMKDKGEVIATDRSHNK 341
           + G   LQ+  S +   AL PQ  ER++DM AAPGGKTT IA LMK+ G + A +    K
Sbjct: 290 MAGFYMLQSASSFLPVMALAPQEKERVVDMAAAPGGKTTYIAALMKNTGIIFANEM---K 346

Query: 342 VLDIQKLAAEL 352
           V  ++ L A L
Sbjct: 347 VPRLKSLTANL 357


>Glyma02g47060.1 
          Length = 528

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 470 DRVLLDAPCSALGLRPRL--FAGEETIESLRSHAKYQRKMFDQAVQLARPGGVIVYSTCT 527
           ++VLLDAPCS LG+  +       + +E +    + Q ++ D A +L +PGGV+VYSTC+
Sbjct: 408 NKVLLDAPCSGLGVLSKRADLRWNKNLEDMEQLKELQDELLDAASKLVKPGGVLVYSTCS 467

Query: 528 INPGENEALVRYALDKYKYLSLAP 551
           I+P EN+  V   L ++    + P
Sbjct: 468 IDPEENDDRVVAFLARHSDFHIDP 491


>Glyma14g01690.1 
          Length = 300

 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 2/67 (2%)

Query: 470 DRVLLDAPCSALG-LRPRL-FAGEETIESLRSHAKYQRKMFDQAVQLARPGGVIVYSTCT 527
           ++VLLDAPCS LG L  R+       +E +    ++Q ++ D A +L +PGGV+VYS+C+
Sbjct: 186 NKVLLDAPCSGLGVLSKRVDLRWNRNLEDMEQLKEFQDELLDAASKLVKPGGVLVYSSCS 245

Query: 528 INPGENE 534
           I+P EN+
Sbjct: 246 IDPEEND 252


>Glyma06g05730.1 
          Length = 491

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 48/90 (53%)

Query: 274 DLPSFHSVLEGDIFLQNLPSIIAAHALDPQMGERILDMCAAPGGKTTAIAILMKDKGEVI 333
           DL     V  G IFLQ   S +AA AL P+ G  +LD CAAPG KT  +A LMK KG++I
Sbjct: 201 DLHDHPLVKNGSIFLQGKASSMAAPALSPEPGWEVLDACAAPGNKTVHLAALMKRKGKII 260

Query: 334 ATDRSHNKVLDIQKLAAELGLSCIKAFRLD 363
           A +    ++  ++      G S I+    D
Sbjct: 261 ACELQRERIKRLKDTIKLSGASNIQVLNDD 290


>Glyma04g05710.1 
          Length = 494

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 65/146 (44%), Gaps = 10/146 (6%)

Query: 274 DLPSFHSVLEGDIFLQNLPSIIAAHALDPQMGERILDMCAAPGGKTTAIAILMKDKGEVI 333
           DL     V  G IFLQ   S +AA AL P+ G  +LD CAAPG KT  +A LMK KG++I
Sbjct: 204 DLHDHPLVKNGSIFLQGKASSMAAPALSPEPGWEVLDACAAPGNKTVHLAALMKRKGKII 263

Query: 334 ATDRSHNKVLDIQKLAAELGLSCIKAFRLDAV----KSVCQRNDIDTLTDPCCNNANNGV 389
           A +    ++  ++      G S I+    D +    K          L DP C+ +    
Sbjct: 264 ACELQKERIKRLKDTIKLSGASNIQVLNDDFLNLNPKDPSYSKVKAILLDPSCSGSGTAA 323

Query: 390 ASQEFSSPH------LQVERMQPLVT 409
           +  +   P         +ER+  L T
Sbjct: 324 SRLDHLLPSKAAGQDADMERLNKLAT 349


>Glyma06g05730.2 
          Length = 299

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query: 287 FLQNLPSIIAAHALDPQMGERILDMCAAPGGKTTAIAILMKDKGEVIATDRSHNKVLDIQ 346
           +++   S +AA AL P+ G  +LD CAAPG KT  +A LMK KG++IA +    ++  ++
Sbjct: 22  YVKGKASSMAAPALSPEPGWEVLDACAAPGNKTVHLAALMKRKGKIIACELQRERIKRLK 81

Query: 347 KLAAELGLSCIKAFRLD 363
                 G S I+    D
Sbjct: 82  DTIKLSGASNIQVLNDD 98