Miyakogusa Predicted Gene

Lj2g3v3058520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3058520.1 Non Chatacterized Hit- tr|B9R8D3|B9R8D3_RICCO
Skp1, putative OS=Ricinus communis GN=RCOM_1598810
PE=,34.07,0.000000008,Found in Skp1 protein family,SKP1 component; no
description,BTB/POZ fold; Skp1_POZ,SKP1 component, P,CUFF.39650.1
         (352 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g23230.1                                                        65   1e-10
Glyma02g05120.1                                                        62   8e-10
Glyma01g36850.2                                                        60   2e-09
Glyma11g08440.1                                                        60   3e-09
Glyma01g39060.2                                                        57   3e-08
Glyma01g39060.1                                                        57   3e-08
Glyma01g36850.1                                                        56   6e-08
Glyma06g11170.1                                                        55   1e-07
Glyma11g06210.1                                                        54   2e-07
Glyma04g12030.1                                                        54   3e-07

>Glyma16g23230.1 
          Length = 155

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 74/137 (54%), Gaps = 7/137 (5%)

Query: 188 VSQDTISLRSSDKVVFEMNKMVAISESKLLKDVIECHPNEDEIPVPRVSSLVLPEVISFC 247
            S   I+L+SSD   FE+ + VA+ ES+ +K +IE    +  IP+P V+S +L +VI +C
Sbjct: 2   ASTKKITLKSSDGEAFEVEEAVAL-ESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYC 60

Query: 248 EKKLKFDQLFKSIGEILKTVFIPYQAWVTRFVNNNHSIFSHLHDAANFLNIPSLFEFTSL 307
           +K ++ +   +   E +       +AW   FVN + +    L  AAN+LNI SL + T  
Sbjct: 61  KKHVEANSADEKPSEDV------LKAWDVDFVNVDQATLFDLILAANYLNIKSLLDLTCQ 114

Query: 308 FTGLQDRGENENKIQET 324
                 +G+   +I++T
Sbjct: 115 TVADMIKGKTPEEIRKT 131


>Glyma02g05120.1 
          Length = 155

 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 7/137 (5%)

Query: 188 VSQDTISLRSSDKVVFEMNKMVAISESKLLKDVIECHPNEDEIPVPRVSSLVLPEVISFC 247
            S   I+L+SSD   FE+ + VA+ ES+ +K +IE +  +  IP+P V+S +L +VI +C
Sbjct: 2   ASTKKITLKSSDGEAFEVEEAVAV-ESQTIKHMIEDNCADSGIPLPNVTSKILAKVIEYC 60

Query: 248 EKKLKFDQLFKSIGEILKTVFIPYQAWVTRFVNNNHSIFSHLHDAANFLNIPSLFEFTSL 307
           +K ++ +   +   E         +AW   FV  + +    L  AAN+LNI SL + T  
Sbjct: 61  KKHVEANCADEKPSE------DELKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQ 114

Query: 308 FTGLQDRGENENKIQET 324
                 +G+   +I++T
Sbjct: 115 TVADMIKGKTPEEIRKT 131


>Glyma01g36850.2 
          Length = 155

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 7/136 (5%)

Query: 189 SQDTISLRSSDKVVFEMNKMVAISESKLLKDVIECHPNEDEIPVPRVSSLVLPEVISFCE 248
           S   I+L+SSD   FE+++ VA+ ES+ +K +IE    +  IP+P V+S +L +VI +C+
Sbjct: 3   SAKKITLKSSDGEAFEVDEAVAL-ESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYCK 61

Query: 249 KKLKFDQLFKSIGEILKTVFIPYQAWVTRFVNNNHSIFSHLHDAANFLNIPSLFEFTSLF 308
           K ++         E         +AW   FV  + +    L  AAN+LNI SL + T   
Sbjct: 62  KHVEAANPEDKPSE------DDLKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQT 115

Query: 309 TGLQDRGENENKIQET 324
                +G+   +I++T
Sbjct: 116 VADMIKGKTPEEIRKT 131


>Glyma11g08440.1 
          Length = 155

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 7/136 (5%)

Query: 189 SQDTISLRSSDKVVFEMNKMVAISESKLLKDVIECHPNEDEIPVPRVSSLVLPEVISFCE 248
           S   I+L+SSD   FE+ + VA+ ES+ +K +IE    +  IP+P V+S +L +VI +C+
Sbjct: 3   SAKKITLKSSDGEAFEVEEAVAL-ESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYCK 61

Query: 249 KKLKFDQLFKSIGEILKTVFIPYQAWVTRFVNNNHSIFSHLHDAANFLNIPSLFEFTSLF 308
           K ++         E         +AW   FV  + +    L  AAN+LNI SL + T   
Sbjct: 62  KHVEAANPEDKPSE------DDLKAWDAEFVKVDQATLFDLILAANYLNIKSLLDLTCQT 115

Query: 309 TGLQDRGENENKIQET 324
                +G+   +I++T
Sbjct: 116 VADMIKGKTPEEIRKT 131


>Glyma01g39060.2 
          Length = 304

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 1  MESGRNSRCAACKILRRNCTQNCVFAPLYEPHN-KMLQFQQECFQSPNIPNLFNNL 55
          M S  NS CAACK LRR CTQ CVFAP + P N +   +  + F + N+  L N L
Sbjct: 1  MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNEL 56


>Glyma01g39060.1 
          Length = 304

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 1  MESGRNSRCAACKILRRNCTQNCVFAPLYEPHN-KMLQFQQECFQSPNIPNLFNNL 55
          M S  NS CAACK LRR CTQ CVFAP + P N +   +  + F + N+  L N L
Sbjct: 1  MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNEL 56


>Glyma01g36850.1 
          Length = 179

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 31/160 (19%)

Query: 189 SQDTISLRSSDKVVFEMNKMVAISESKLLKDVIECHPNEDEIPVPRVSSLVLPEVISFCE 248
           S   I+L+SSD   FE+++ VA+ ES+ +K +IE    +  IP+P V+S +L +VI +C+
Sbjct: 3   SAKKITLKSSDGEAFEVDEAVAL-ESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYCK 61

Query: 249 KKLKFDQLFKSIGEILKTVFIPYQAWVTRFVNNNHS------IFSHLHD----------- 291
           K ++         E         +AW   FV  + +      +  HLHD           
Sbjct: 62  KHVEAANPEDKPSE------DDLKAWDADFVKVDQATLFDLILVQHLHDIQFHCSTLLFS 115

Query: 292 -------AANFLNIPSLFEFTSLFTGLQDRGENENKIQET 324
                  AAN+LNI SL + T        +G+   +I++T
Sbjct: 116 LCLFSSSAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKT 155


>Glyma06g11170.1 
          Length = 147

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 4/78 (5%)

Query: 3  SGRNSRCAACKILRRNCTQNCVFAPLYEPHN-KMLQFQQECFQSPNIPNLFNNLVSEMAA 61
          S  NS CAACKI RR CTQ CVFAP + P N +   +  + F + N+  L N L    AA
Sbjct: 1  SSSNSPCAACKIQRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNEL---NAA 57

Query: 62 TTQSEVPSGAVDSTGKAK 79
            +  V S A ++  + +
Sbjct: 58 QREDAVKSLAYEAEARLR 75


>Glyma11g06210.1 
          Length = 296

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 6  NSRCAACKILRRNCTQNCVFAPLYEPHN-KMLQFQQECFQSPNIPNLFNNL 55
          NS CAACK LRR CTQ CVFAP + P N +   +  + F + N+  L N L
Sbjct: 2  NSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNEL 52


>Glyma04g12030.1 
          Length = 129

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 3  SGRNSRCAACKILRRNCTQNCVFAPLYEPHN-KMLQFQQECFQSPNIPNLFNNLVSEMAA 61
          S  NS CAACKI RR CTQ CVFAP + P N +   +  + F + N+  L N L    AA
Sbjct: 2  SSSNSPCAACKIQRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNEL---NAA 58

Query: 62 TTQSEVPSGAVDSTGK 77
            +  + S A ++  +
Sbjct: 59 QREDAIKSLAYEAEAR 74