Miyakogusa Predicted Gene
- Lj2g3v3022790.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3022790.1 Non Chatacterized Hit- tr|Q2QQL7|Q2QQL7_ORYSJ
Retrotransposon protein, putative, Ty1-copia subclass
,49.41,2e-19,PREDICTED PROTEIN (FRAGMENT),NULL; GAG-POL-RELATED
RETROTRANSPOSON,NULL,CUFF.39604.1
(87 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma15g29960.1 90 4e-19
Glyma16g09250.1 72 1e-13
Glyma03g29220.1 62 1e-10
Glyma16g17690.1 61 3e-10
Glyma10g10160.1 56 8e-09
Glyma16g13610.1 55 2e-08
Glyma18g38660.1 55 2e-08
Glyma17g16230.1 54 4e-08
Glyma06g37310.1 54 5e-08
Glyma02g19630.1 52 1e-07
Glyma04g26800.1 52 1e-07
Glyma07g34840.1 51 3e-07
Glyma16g28890.1 50 5e-07
Glyma15g42470.1 49 1e-06
Glyma03g04980.1 49 1e-06
Glyma02g14000.1 49 2e-06
>Glyma15g29960.1
Length = 817
Score = 90.1 bits (222), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 50/68 (73%)
Query: 1 MPLYYWWEAFATAVFLINRLPSQILQNQSPYDLLFHKTPDYKAMKTFGCACYPCLKPYNQ 60
+PL +W AF TAV+LINRLPS L+ PY +LFH PDY+ ++ FGC+C+P L+P +
Sbjct: 204 LPLSFWDHAFQTAVYLINRLPSASLKFDIPYTVLFHTIPDYQFLRVFGCSCFPFLRPCHS 263
Query: 61 HKLQFHSS 68
HKL+F +S
Sbjct: 264 HKLEFSNS 271
>Glyma16g09250.1
Length = 1460
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 2 PLYYWWEAFATAVFLINRLPSQILQNQS-PYDLLFHKTPDYKAMKTFGCACYPCLKPYNQ 60
P +YW AF TAV++INRLP+ N P +LF+ PDY ++ FGCACYP L PYN
Sbjct: 718 PYHYWDHAFHTAVYIINRLPAS--HNHCIPLKVLFNNVPDYNFLRAFGCACYPLLTPYNN 775
Query: 61 HKLQFHSSYIVVAYVPTADQTADCL 85
K Q+ S + T+ + CL
Sbjct: 776 PKFQYRSKECIFLGYSTSHRGYKCL 800
>Glyma03g29220.1
Length = 952
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 18 NRLPSQILQNQSPYDLLFHKTPDYKAMKTFGCACYPCLKPYNQHKLQFHSSYIVVAYVPT 77
+RLP+ L P+ LF+K PD+ +KTFGCAC+P LKPY+ HKL F S V +
Sbjct: 456 HRLPTAALNFAIPFVTLFNKEPDFHFLKTFGCACFPLLKPYHTHKLDFRSQECVFLGYYS 515
Query: 78 ADQTADCLTK 87
+ + CL+
Sbjct: 516 SHKGYKCLSS 525
>Glyma16g17690.1
Length = 3826
Score = 60.8 bits (146), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 30 PYDLLFHKTPDYKAMKTFGCACYPCLKPYNQHKLQFHS 67
PY L PDY+ +KTFGCAC+P L+PYN+HKL F S
Sbjct: 664 PYTTLLKNPPDYQFLKTFGCACFPFLRPYNKHKLDFRS 701
>Glyma10g10160.1
Length = 2160
Score = 56.2 bits (134), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 1 MPLYYWWEAFATAVFLINRLPSQILQNQSPYDLLFHKTPDYK-AMKTFGCACY 52
+P+++W +A TA FLINR+PS L+NQ P+ L+F P + + K FGC C+
Sbjct: 1404 VPIHHWGDAVLTACFLINRMPSSSLENQIPHSLVFPHDPLFHVSPKVFGCTCF 1456
>Glyma16g13610.1
Length = 2095
Score = 55.1 bits (131), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 1 MPLYYWWEAFATAVFLINRLPSQILQNQSPYDLLFHKTPDYK-AMKTFGCACY 52
+P ++W +A TA FLINR+PS L+NQ P+ ++F P + + K FGC C+
Sbjct: 1126 VPTHHWGDAVLTACFLINRMPSSSLENQIPHSIVFPHDPLFHVSPKVFGCTCF 1178
>Glyma18g38660.1
Length = 1634
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 1 MPLYYWWEAFATAVFLINRLPSQILQNQSPYDLLFHKTPDYKAMKTFGCACYPCLKPYNQ 60
+P +W A + AV+++NR+P+ LQN+SPY LL++ PD+ +K F + C +P +
Sbjct: 568 LPKSFWCYAVSHAVYIMNRVPAPNLQNKSPYTLLYNTAPDFDTLKAFSMSITHCTEPQSY 627
Query: 61 HKLQFHSSYIV 71
+ H ++
Sbjct: 628 EEASKHEHWVT 638
>Glyma17g16230.1
Length = 853
Score = 53.9 bits (128), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 1 MPLYYWWEAFATAVFLINRLPSQILQNQSPYDLLFHKTPDYKAMKTFGCACYPCLKPYNQ 60
+P YW +A T VFL+NRLP++ + ++P++ + P K K FGC C+ + +
Sbjct: 489 LPKEYWAKATNTTVFLLNRLPTKAVNGKTPFETWYGYKPSLKNFKVFGCLCFTYVPQIKR 548
Query: 61 HKL 63
KL
Sbjct: 549 DKL 551
>Glyma06g37310.1
Length = 160
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 1 MPLYYWWEAFATAVFLINRLPSQILQNQSPYDLLFHKTPDYKAMKTFGCACYPCLKPYNQ 60
+P W EA +T ++++NR P++ + N +PY+ F++ P K FGC Y ++ N+
Sbjct: 11 LPKNLWAEAVSTTIYILNRSPTKAVLNMTPYEAWFNRKPTVHHFKVFGCVAYSHIQKENR 70
Query: 61 HKLQFHSSYIVVAYVPTADQT 81
KL + +V +DQ+
Sbjct: 71 EKLNEKEEKCI--FVSYSDQS 89
>Glyma02g19630.1
Length = 1207
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 1 MPLYYWWEAFATAVFLINRLPSQILQNQSPYDLLFHKTPDYK-AMKTFGCACY 52
+P ++W +A TA FLINR+PS ++NQ P+ ++F P + + K FGC C+
Sbjct: 496 VPTHHWGDAVLTACFLINRMPSSSIENQIPHSIVFPHDPLFHVSPKVFGCTCF 548
>Glyma04g26800.1
Length = 1312
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 3 LYYWWEAFATAVFLINRLPSQILQNQSPYDLLFHKTPDYK-AMKTFGCACY 52
+++W +A TA FLINR+PS L+NQ P+ ++F P + + K FGC C+
Sbjct: 470 IHHWGDAVLTACFLINRMPSSSLENQIPHSIVFSHDPLFHVSPKVFGCTCF 520
>Glyma07g34840.1
Length = 1562
Score = 50.8 bits (120), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 1 MPLYYWWEAFATAVFLINRLPSQILQNQSPYDLLFHKTPDYKAMKTFGCACYPCLKPYNQ 60
+P +W EA TAV+++NR P++ +++ +P + K P K ++ FG CY + +
Sbjct: 644 LPNTFWAEAVYTAVYILNRCPTKSVKDMTPIEAWNGKKPSAKHLRVFGSICYIHIPDVKR 703
Query: 61 HKLQ 64
HKL+
Sbjct: 704 HKLE 707
>Glyma16g28890.1
Length = 2359
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 14 VFLINRLPSQILQNQSPYDLLFHKTPDYKAMKTFGCACYPCLKPYNQHKLQFHS 67
V LINRL S + N+SP++ L+ P+Y ++ FGC CY L P + KL S
Sbjct: 948 VHLINRLSSPSIGNESPFNRLYGHPPNYSNLRIFGCVCYVHLPPRERTKLTAQS 1001
>Glyma15g42470.1
Length = 1094
Score = 48.9 bits (115), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 1 MPLYYWWEAFATAVFLINRLPSQILQNQSPYDLLFHKTPDYKAMKTFGCACYPCLKPYNQ 60
+P +W EA T V+LIN+ PS L ++P ++ P K +K FGC Y +K Q
Sbjct: 529 LPKIFWAEAAMTDVYLINKCPSTALNFKTPEEIWSGHPPSLKELKVFGCVAYAHIK---Q 585
Query: 61 HKLQFHSSYIVVAY 74
KL+ + +AY
Sbjct: 586 DKLEPRAVKSEMAY 599
>Glyma03g04980.1
Length = 1363
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1 MPLYYWWEAFATAVFLINRLPSQILQNQSPYDLLFHKTPDYKAMKTFGCACYPCLKPYNQ 60
+P +W E T V+LIN+ PS L ++ ++ + P K +K FGC YP +K Q
Sbjct: 640 LPKIFWAEETMTVVYLINKCPSTALNFKTTEEIWSGRPPSLKQLKVFGCVAYPHIK---Q 696
Query: 61 HKLQ 64
KL+
Sbjct: 697 DKLE 700
>Glyma02g14000.1
Length = 1050
Score = 48.5 bits (114), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 1 MPLYYWWEAFATAVFLINRLPSQILQNQSPYDLLFHKTPDYKAMKTFGCACYPCLKPYNQ 60
M Y+W E +T V+++NR P++ LQ +P + K P+ + FG C+ + N+
Sbjct: 547 MSHYFWGETTSTTVYIMNRCPTKRLQGYTPEEAWLEKKPNVSHFRIFGSLCFRHVPEQNR 606
Query: 61 HKL 63
KL
Sbjct: 607 KKL 609