Miyakogusa Predicted Gene

Lj2g3v2585500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2585500.1 tr|G7KBR0|G7KBR0_MEDTR Ribosomal RNA large
subunit methyltransferase N OS=Medicago truncatula
GN=MTR,84.28,0,Radical_SAM,Radical SAM; Fer4_14,NULL; no
description,Radical SAM, alpha/beta horseshoe; Radical
SAM,CUFF.39122.1
         (406 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g07450.1                                                       640   0.0  
Glyma02g41500.1                                                       605   e-173
Glyma08g39710.1                                                       188   7e-48
Glyma11g00390.1                                                       173   3e-43
Glyma01g45360.1                                                       115   1e-25
Glyma08g39710.2                                                        92   1e-18
Glyma08g39710.3                                                        92   1e-18

>Glyma14g07450.1 
          Length = 416

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/399 (77%), Positives = 346/399 (86%), Gaps = 6/399 (1%)

Query: 1   MLALLQHCSXXXXXXXXXXXXX------XXMAIAAASPRTISQPQVLLGLSEQDLRQLAL 54
           MLALLQ+CS                     +A A+ S R  SQ QVLLGLSE++L+QLAL
Sbjct: 1   MLALLQNCSMPLARAVRSPPRTHVRPCFTAVAYASISSRANSQSQVLLGLSEKELQQLAL 60

Query: 55  DLGQQGFRGRQLYHLIYKRKIREVQEFIQLPQAFRNDLEEAGWKVGRSPIFKSVTAADGT 114
           DL Q+ +RG+QL+H +Y+RK+RE+Q+F QLPQ FRN LEE GWKVGRSPIF++VTAADGT
Sbjct: 61  DLNQETYRGKQLHHFLYQRKLREIQDFTQLPQGFRNTLEETGWKVGRSPIFQTVTAADGT 120

Query: 115 VKLLLKLEDNRLIETVGIPVDDDKGSGRLTACVSSQVGCPLRCSFCATGKGGFSRNLQKH 174
           VKLLLKLEDNRL+ETVGIPV  DKG  RLTACVSSQVGCPLRCSFCATGKGGFSRNLQ+H
Sbjct: 121 VKLLLKLEDNRLVETVGIPVMVDKGLTRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRH 180

Query: 175 EIVEQVLAIEEVFKRRVTNVVFMGMGEPMLNLKAVLGAHQCLNKDVQIGQRMMTISTVGV 234
           EI+EQVLAIEEVFK RVTNVVFMGMGEPMLNLKAVL AH+CLNKDVQIGQRM+TISTVGV
Sbjct: 181 EIIEQVLAIEEVFKNRVTNVVFMGMGEPMLNLKAVLEAHRCLNKDVQIGQRMITISTVGV 240

Query: 235 PNTMKKLATHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLEALMKDCSEYFRETNRRVSF 294
           PNT+KKLA+HKLQSTLAVSLHAPNQKLRETIVPSAKSYPL+ALM DC EYF++T+RRVSF
Sbjct: 241 PNTIKKLASHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLDALMSDCREYFQQTSRRVSF 300

Query: 295 EYALLAGINDSVDHAVELAKLLREWGSGYHVNLIPFNPIEGSEYKRPYRKAVKAFSDALE 354
           EYALLAG+NDSVDHA+ELA+LL   GSGYHVNLIPFNPIEGSEY+RP ++AV  FS ALE
Sbjct: 301 EYALLAGVNDSVDHALELAELLHRSGSGYHVNLIPFNPIEGSEYQRPSKRAVLTFSGALE 360

Query: 355 SSKITVSVRQTRGLDANAACGQLRNEFQKAPMATDSDNL 393
           SSKITVSVRQTRGLDANAACGQLRN+FQK P+ TD  +L
Sbjct: 361 SSKITVSVRQTRGLDANAACGQLRNKFQKTPLVTDPFDL 399


>Glyma02g41500.1 
          Length = 397

 Score =  605 bits (1560), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 299/396 (75%), Positives = 332/396 (83%), Gaps = 19/396 (4%)

Query: 1   MLALLQHCSXXXXXXXXXXXXXXXMAIAAA---SPRTISQPQVLLGLSEQDLRQLALDLG 57
           MLALLQ+CS               M +A A    PRT  +P     +    +   A    
Sbjct: 1   MLALLQNCS---------------MPLARAVRLPPRTHVRP-CFTAVGYASISPRANSQS 44

Query: 58  QQGFRGRQLYHLIYKRKIREVQEFIQLPQAFRNDLEEAGWKVGRSPIFKSVTAADGTVKL 117
           Q  +RG+QL+H +Y+RK+RE+Q+F QLPQ FRN LEEAGWKVGRSPIF++VTAADGTVKL
Sbjct: 45  QATYRGKQLHHFLYQRKLREIQDFTQLPQGFRNTLEEAGWKVGRSPIFETVTAADGTVKL 104

Query: 118 LLKLEDNRLIETVGIPVDDDKGSGRLTACVSSQVGCPLRCSFCATGKGGFSRNLQKHEIV 177
           LLKLEDNRLIETVGIPV  DKG  RLTACVSSQVGCPLRCSFCATGKGGFSRNLQ+HEIV
Sbjct: 105 LLKLEDNRLIETVGIPVMVDKGLTRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIV 164

Query: 178 EQVLAIEEVFKRRVTNVVFMGMGEPMLNLKAVLGAHQCLNKDVQIGQRMMTISTVGVPNT 237
           EQVLAIEEVFK RVTNVVFMGMGEPMLNLKAVL AH CLNKDVQIGQRM+TISTVGVPNT
Sbjct: 165 EQVLAIEEVFKNRVTNVVFMGMGEPMLNLKAVLEAHHCLNKDVQIGQRMITISTVGVPNT 224

Query: 238 MKKLATHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLEALMKDCSEYFRETNRRVSFEYA 297
           +KKLA+HKLQSTLAVSLHAPNQKLRETIVPSAKSYPL+ALM DC EYF++T+RRVSFEYA
Sbjct: 225 IKKLASHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLDALMSDCREYFQQTSRRVSFEYA 284

Query: 298 LLAGINDSVDHAVELAKLLREWGSGYHVNLIPFNPIEGSEYKRPYRKAVKAFSDALESSK 357
           LLAG+NDSV+HA+ELA+LL   GSGYHVNLIPFNPIEGSEY+RP ++AV AFS ALESSK
Sbjct: 285 LLAGVNDSVNHALELAELLHRSGSGYHVNLIPFNPIEGSEYQRPSKRAVLAFSGALESSK 344

Query: 358 ITVSVRQTRGLDANAACGQLRNEFQKAPMATDSDNL 393
           ITVSVRQTRGLDANAACGQLRN+FQK P+ TD  +L
Sbjct: 345 ITVSVRQTRGLDANAACGQLRNKFQKTPVVTDPFDL 380


>Glyma08g39710.1 
          Length = 454

 Score =  188 bits (478), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 132/357 (36%), Positives = 188/357 (52%), Gaps = 38/357 (10%)

Query: 40  VLLGLSEQDLRQLALDLGQQGFRGRQLYHLIYKRKI--REVQEFIQLPQAFRNDLEEAGW 97
           +L G++  +L +     G +  +   L+  +Y   I    + E   L + F+  L E   
Sbjct: 92  LLKGMTYPELEKWVQSHGYRPGQAMMLWKRMYGNNIWAHHIDELEGLNKDFKKMLNE--- 148

Query: 98  KVGRSPIFKSVT------AADGTVKLLLKLEDNRLIETVGIPVDDDKGSGRLTACVSSQV 151
               +  FK++T      A+DGT K+L  LED  +IETV IP D     GR T CVSSQV
Sbjct: 149 ----NAEFKALTQKEIRTASDGTRKILFTLEDGLVIETVVIPCD----RGRTTVCVSSQV 200

Query: 152 GCPLRCSFCATGKGGFSRNLQKHEIVEQVLAIEEVFKRR--------VTNVVFMGMGEPM 203
           GC + C FC TG+ G  R+L   EIVEQ      VF RR        +TNVVFMGMGEP+
Sbjct: 201 GCAMNCQFCYTGRMGLRRHLTAAEIVEQA-----VFARRLLTDEVGSITNVVFMGMGEPL 255

Query: 204 LNLKAVLGAHQCL--NKDVQIGQRMMTISTVGVPNTMKKLATHKLQSTLAVSLHAPNQKL 261
            N+  V+ A   +   + +Q   R +TIST G+   +K+   H+    LAVSL+A   ++
Sbjct: 256 HNIDNVIKAADIMVDEQGLQFSPRKVTISTSGLVPQLKRF-LHESNCALAVSLNATTDEV 314

Query: 262 RETIVPSAKSYPLEALMKDCSEYF-RETNRRVSFEYALLAGINDSVDHAVELAKLLREWG 320
           R  I+P  + Y LE L++   E    + N +V FEY +L G+NDS   A  L +L++  G
Sbjct: 315 RNWIMPINRKYKLELLLQTLREELCFKKNYKVLFEYVMLEGVNDSDGDAERLIELVK--G 372

Query: 321 SGYHVNLIPFNPIEGSEYKRPYRKAVKAFSDALESSKITVSVRQTRGLDANAACGQL 377
               +NLI FNP  GS +K    + +  F + L  + + V +R +RG D  AACGQL
Sbjct: 373 IPCKINLISFNPHSGSFFKPTKDERMIEFRNTLAGAGLVVILRLSRGDDQMAACGQL 429


>Glyma11g00390.1 
          Length = 378

 Score =  173 bits (439), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/296 (38%), Positives = 162/296 (54%), Gaps = 23/296 (7%)

Query: 101 RSPIFKSV-----TAADGTVKLLLKLEDNR--LIETVGIPVDDD---------KGSGRLT 144
           ++P+  S+     +A + T KLL++L  N    +E V +  D            G  R T
Sbjct: 64  KTPLSSSIHSVFHSADNLTTKLLIQLHHNHGPFVEAVIMRYDTRLGKYAGQPRPGGLRAT 123

Query: 145 ACVSSQVGCPLRCSFCATGKGGFSRNLQKHEIVEQVLAIEEVFKRRVTNVVFMGMGEPML 204
            C+SSQVGC + C+FCATG  GF  NL   EIVEQ++      + R  NVVFMGMGEP+ 
Sbjct: 124 LCISSQVGCKMGCNFCATGSMGFKNNLSSGEIVEQLVHASTFSQIR--NVVFMGMGEPLN 181

Query: 205 NLKAVLGAHQCLNK-DVQIGQRMMTISTVGVPNTMKKLATHKLQSTLAVSLHAPNQKLRE 263
           N  AV+ A + +     Q+  + +TISTVG+ + + KL        LAVSLHAP Q +R 
Sbjct: 182 NYSAVVEAVRIMTGLPFQLSSKRITISTVGIIHAINKLHDDLPGLNLAVSLHAPAQDIRC 241

Query: 264 TIVPSAKSYPLEALMKDCSEYFRETNRRVSFEYALLAGINDSVDHAVELAKLLREWGSGY 323
            I+P+A+++PL  LM     Y R++ +++  EY +L G+ND   HA  L KLL  +    
Sbjct: 242 QIMPAARAFPLGKLMDSLQVYQRKSLQKIFIEYIMLDGVNDEEHHAHLLGKLLETF--QV 299

Query: 324 HVNLIPFNPIEG-SEYKRPYRKAVKAFSDALESS-KITVSVRQTRGLDANAACGQL 377
            VNLIPFN I   S++K    + V  F   L  +  I  +VR+  G D + ACGQL
Sbjct: 300 VVNLIPFNSIGTLSQFKPTSEQKVSNFQKILRGTYNIRTTVRKQMGQDISGACGQL 355


>Glyma01g45360.1 
          Length = 276

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 122/250 (48%), Gaps = 46/250 (18%)

Query: 151 VGCPLRCSFCATGKGGFSRNLQKHEIVEQVLAIEEVFKRRVTNVVFMGMGEPMLNLKAVL 210
           +GC + C+FCATG  GF  NL   EIVEQ++  + V    +++  +  +   +L      
Sbjct: 29  LGCKMGCNFCATGSMGFKNNLSSGEIVEQLVHHKSVM---LSSWEWESLSTTIL------ 79

Query: 211 GAHQCLNKDVQIGQRMMTISTVGVPNTMKKLATHKLQSTLAVSLHAPNQKLRETIVPSAK 270
                           +TISTVG+ + + KL        LAVSLHAP Q +R  I+P+A+
Sbjct: 80  --------------LWITISTVGIIHAINKLHNDLSGLNLAVSLHAPAQDIRCQIMPAAR 125

Query: 271 SYPLEALMKDCSEYFRETNRRVSFEYALLAGINDSVDHAVELAKLLRE------------ 318
           ++PL  LM    +Y  ++ +++  EY +L G+ND   HA +L KL R+            
Sbjct: 126 AFPLGKLMDSLQDYQSKSLQKIFIEYIMLDGVNDEEHHAHQLGKLSRDISSVQCLSQEKV 185

Query: 319 ------WGSGYH---VNLIPFNPIEG-SEYKRPYRKAVKAFSDALESS-KITVSVRQTRG 367
                 + +  H   VNL+PFN I   S++K    + V  F   L  +  I  +VR+  G
Sbjct: 186 LKTRSSFSAQLHNAVVNLMPFNSIGTLSQFKPTSEQNVSNFHKILWGTYHIRTTVRKQMG 245

Query: 368 LDANAACGQL 377
            D + ACGQL
Sbjct: 246 QDISGACGQL 255


>Glyma08g39710.2 
          Length = 252

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 87/174 (50%), Gaps = 32/174 (18%)

Query: 40  VLLGLSEQDLRQLALDLGQQGFRGRQLYHLIYKRKI--REVQEFIQLPQAFRNDLEEAGW 97
           +L G++  +L +     G +  +   L+  +Y   I    + E   L + F+  L E   
Sbjct: 92  LLKGMTYPELEKWVQSHGYRPGQAMMLWKRMYGNNIWAHHIDELEGLNKDFKKMLNE--- 148

Query: 98  KVGRSPIFKSVT------AADGTVKLLLKLEDNRLIETVGIPVDDDKGSGRLTACVSSQV 151
               +  FK++T      A+DGT K+L  LED  +IETV IP D     GR T CVSSQV
Sbjct: 149 ----NAEFKALTQKEIRTASDGTRKILFTLEDGLVIETVVIPCD----RGRTTVCVSSQV 200

Query: 152 GCPLRCSFCATGKGGFSRNLQKHEIVEQVLAIEEVFKRR--------VTNVVFM 197
           GC + C FC TG+ G  R+L   EIVEQ      VF RR        +TNVVFM
Sbjct: 201 GCAMNCQFCYTGRMGLRRHLTAAEIVEQA-----VFARRLLTDEVGSITNVVFM 249


>Glyma08g39710.3 
          Length = 255

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 87/174 (50%), Gaps = 32/174 (18%)

Query: 40  VLLGLSEQDLRQLALDLGQQGFRGRQLYHLIYKRKI--REVQEFIQLPQAFRNDLEEAGW 97
           +L G++  +L +     G +  +   L+  +Y   I    + E   L + F+  L E   
Sbjct: 92  LLKGMTYPELEKWVQSHGYRPGQAMMLWKRMYGNNIWAHHIDELEGLNKDFKKMLNE--- 148

Query: 98  KVGRSPIFKSVT------AADGTVKLLLKLEDNRLIETVGIPVDDDKGSGRLTACVSSQV 151
               +  FK++T      A+DGT K+L  LED  +IETV IP D     GR T CVSSQV
Sbjct: 149 ----NAEFKALTQKEIRTASDGTRKILFTLEDGLVIETVVIPCD----RGRTTVCVSSQV 200

Query: 152 GCPLRCSFCATGKGGFSRNLQKHEIVEQVLAIEEVFKRR--------VTNVVFM 197
           GC + C FC TG+ G  R+L   EIVEQ      VF RR        +TNVVFM
Sbjct: 201 GCAMNCQFCYTGRMGLRRHLTAAEIVEQA-----VFARRLLTDEVGSITNVVFM 249