Miyakogusa Predicted Gene

Lj2g3v2572180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2572180.1 Non Chatacterized Hit- tr|D7TSR3|D7TSR3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,44.19,0.0000000000002,Double-stranded RNA binding
motif,Double-stranded RNA-binding; dsrm,Double-stranded RNA-binding;
dsR,CUFF.39108.1
         (105 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g50130.1                                                        52   1e-07
Glyma14g07600.1                                                        50   8e-07

>Glyma18g50130.1 
          Length = 90

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 31/45 (68%)

Query: 33 FRSQLHIFAQRAKVGGPVYQTVNEGTQHDPRFRSTVSMGGKSYTT 77
          ++++L  F Q+  +  P+Y  VNEG QHDP+FRSTV + G  YT+
Sbjct: 10 YKTRLQSFTQKCNISLPMYINVNEGRQHDPKFRSTVWVDGMKYTS 54


>Glyma14g07600.1 
          Length = 459

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 33/49 (67%)

Query: 33 FRSQLHIFAQRAKVGGPVYQTVNEGTQHDPRFRSTVSMGGKSYTTQFSY 81
          ++++L  F  ++ +  PVYQT+NEG  H P+FRSTV +    YT+Q ++
Sbjct: 27 YKNRLQEFTSKSGINFPVYQTINEGQDHSPKFRSTVWVADMGYTSQSTF 75