Miyakogusa Predicted Gene

Lj2g3v2256250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2256250.1 tr|A9RVV8|A9RVV8_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_71077
,36.63,0.0000000001,WD40,WD40 repeat; seg,NULL; WD40
repeat-like,WD40-repeat-containing domain; no
description,WD40/YVTN,CUFF.38769.1
         (370 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g37230.1                                                       462   e-130
Glyma02g39130.1                                                       449   e-126
Glyma01g07420.1                                                        58   2e-08

>Glyma14g37230.1 
          Length = 561

 Score =  462 bits (1189), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/299 (76%), Positives = 250/299 (83%)

Query: 1   MAPVTRRVPFPKVVIERDTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGVAEIGKNEKL 60
           MAPVTRR  FPKV+IERD+D                                   K EKL
Sbjct: 1   MAPVTRRTSFPKVLIERDSDSEQSSSEEEEILEEEEEEEEEEEEEEEVGVSTANEKAEKL 60

Query: 61  EVGLDANRKGKTPITLPLRKVCKVCKKPGHESGFKGATYIDCPMKPCFLCKTPGHTTLTC 120
           ++G DANRKGK PIT+ L+KVCKVCKKPGHE+GFKGATY+DCPMKPCFLCK PGHTTLTC
Sbjct: 61  DLGSDANRKGKAPITISLKKVCKVCKKPGHEAGFKGATYVDCPMKPCFLCKMPGHTTLTC 120

Query: 121 PHRFSTEHGVVPAPRKKTCKPFEYVFERQLRPGIPSIKPKYVIPDQVNCAVIRYHSRRIT 180
           PHR STEHGVVPAPR+KTCKP +YVFERQLRP +PSIKPKYVIPDQVNCAVIRYHSRR+T
Sbjct: 121 PHRVSTEHGVVPAPRRKTCKPLDYVFERQLRPSLPSIKPKYVIPDQVNCAVIRYHSRRVT 180

Query: 181 CLEFHPTKNNIILSGDKKGQLGVWDFVRVHEKVVYGNIHSCLLNNMKFNPTNDCMVYSAS 240
           CLEFHPTKNNI+LSGDKKGQLGVWDF +V+EKVVYGNIHSCL+NNM+FNPTNDCMVYSAS
Sbjct: 181 CLEFHPTKNNILLSGDKKGQLGVWDFGKVYEKVVYGNIHSCLVNNMRFNPTNDCMVYSAS 240

Query: 241 SDGTISFTDLETGISSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVLVADNFGFLHLL 299
           SDGTIS TDLETGISSS MNLNP+GWQGP+TWKML GMDINSEKGLVLVAD+FGFLH++
Sbjct: 241 SDGTISCTDLETGISSSPMNLNPDGWQGPNTWKMLNGMDINSEKGLVLVADSFGFLHMV 299


>Glyma02g39130.1 
          Length = 556

 Score =  449 bits (1154), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/300 (76%), Positives = 250/300 (83%), Gaps = 8/300 (2%)

Query: 1   MAPVTRRVPFPKVVIERDTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGVAEIG-KNEK 59
           MAPVT R  FPKV+IERD+D                             GV+    K EK
Sbjct: 1   MAPVTPRTAFPKVLIERDSDSEQSSSEEEEEKLDEEEEEEEV-------GVSTANEKTEK 53

Query: 60  LEVGLDANRKGKTPITLPLRKVCKVCKKPGHESGFKGATYIDCPMKPCFLCKTPGHTTLT 119
           LE+G DANRKGK PIT+ L+KVCKVCKKPGHE+GFKGA YIDCPMKPCFLCK PGHTTLT
Sbjct: 54  LELGSDANRKGKAPITISLKKVCKVCKKPGHEAGFKGAAYIDCPMKPCFLCKMPGHTTLT 113

Query: 120 CPHRFSTEHGVVPAPRKKTCKPFEYVFERQLRPGIPSIKPKYVIPDQVNCAVIRYHSRRI 179
           CPHR STEHGVVPAPR+K CKP EYVFERQLRP +PSIKPKYVIPDQVNCAVIRYHSRRI
Sbjct: 114 CPHRVSTEHGVVPAPRRKACKPLEYVFERQLRPSLPSIKPKYVIPDQVNCAVIRYHSRRI 173

Query: 180 TCLEFHPTKNNIILSGDKKGQLGVWDFVRVHEKVVYGNIHSCLLNNMKFNPTNDCMVYSA 239
           TCLEFHPTKNNI+LSGDKKGQLGVWDF +V+EKVVYGNIHSCL+NNM+FNPTNDCMVYSA
Sbjct: 174 TCLEFHPTKNNILLSGDKKGQLGVWDFGKVYEKVVYGNIHSCLVNNMRFNPTNDCMVYSA 233

Query: 240 SSDGTISFTDLETGISSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVLVADNFGFLHLL 299
           SSDGTIS TDLETGISSS +NLNP+GWQGP+TWKML G+DINSEKGLVLVAD+FGFLH++
Sbjct: 234 SSDGTISCTDLETGISSSPLNLNPDGWQGPNTWKMLNGLDINSEKGLVLVADSFGFLHMV 293


>Glyma01g07420.1 
          Length = 151

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 38/55 (69%), Gaps = 4/55 (7%)

Query: 217 NIHSCLLNNMKFNPT----NDCMVYSASSDGTISFTDLETGISSSLMNLNPEGWQ 267
           ++H+  L   K  P     NDCMVYSASS+GTIS TDLET ISSS +  NP+GWQ
Sbjct: 97  SVHTSSLITTKLLPCLIHENDCMVYSASSNGTISCTDLETVISSSPVIRNPDGWQ 151