Miyakogusa Predicted Gene

Lj2g3v2088480.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2088480.1 tr|G7J789|G7J789_MEDTR F-box protein SKIP19
OS=Medicago truncatula GN=MTR_3g080280 PE=4
SV=1,40.13,6e-19,Leucine-rich repeat - CC
(cysteine-containin,Leucine-rich repeat, cysteine-containing subtype;
N7-RE,gene.g42936.t1.1
         (267 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g29200.1                                                       143   2e-34
Glyma15g09890.1                                                       139   5e-33
Glyma06g10680.3                                                        69   7e-12
Glyma06g10680.2                                                        69   7e-12
Glyma06g10680.1                                                        69   7e-12
Glyma04g10850.2                                                        68   1e-11
Glyma04g10850.1                                                        68   1e-11
Glyma02g36660.1                                                        66   3e-11
Glyma02g36660.2                                                        66   3e-11
Glyma17g02300.1                                                        50   4e-06

>Glyma13g29200.1 
          Length = 311

 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/143 (56%), Positives = 104/143 (72%), Gaps = 2/143 (1%)

Query: 102 SKLCRIRVAKSPEISERGLLEIAKKFPLLEELGISLTPLLSEDFLEAIGRSCPLLKTLKL 161
           S L  +R+A   +IS+ GL EIA+K P LEEL IS++ L ++D LEAIG+ CP LKTLK 
Sbjct: 109 SNLRSLRLACCYQISDEGLCEIAEKLPQLEELDISISNL-TKDPLEAIGQCCPHLKTLKF 167

Query: 162 NMKTHTHQWLVSEDDVAFAIAKTMPQLRHLQIMGIYITNNALLAILDGCPLLEYLDLRAC 221
           NM+ +    +   D+ AFAIA+TMP L HLQ+ G  +TN  LLAILDGCPLLE LDLR C
Sbjct: 168 NMEGYRRPHIEC-DEEAFAIAETMPGLHHLQLFGNKLTNEGLLAILDGCPLLESLDLRQC 226

Query: 222 HLLDLSGSLGKKCRERIKVVRLP 244
             ++L+GSLGK+C E+IK +RLP
Sbjct: 227 FNVNLAGSLGKRCAEQIKELRLP 249



 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 28/86 (32%)

Query: 1   MLEELDISLTYLSEDSFEAI------------------------DDETFAIAKTMP---- 32
            LEELDIS++ L++D  EAI                        D+E FAIA+TMP    
Sbjct: 136 QLEELDISISNLTKDPLEAIGQCCPHLKTLKFNMEGYRRPHIECDEEAFAIAETMPGLHH 195

Query: 33  VQIMGNYICNDALLTILDGCPLLEYL 58
           +Q+ GN + N+ LL ILDGCPLLE L
Sbjct: 196 LQLFGNKLTNEGLLAILDGCPLLESL 221


>Glyma15g09890.1 
          Length = 318

 Score =  139 bits (349), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 79/144 (54%), Positives = 100/144 (69%), Gaps = 2/144 (1%)

Query: 102 SKLCRIRVAKSPEISERGLLEIAKKFPLLEELGISLTPLL-SEDFLEAIGRSCPLLKTLK 160
           S L  +R+A   +IS+ GL EIAK+ P LEEL IS++    + D LEA+GR C  LKTLK
Sbjct: 115 SNLRSLRLACCYQISDEGLCEIAKELPQLEELDISISSFNPTRDPLEAVGRCCRHLKTLK 174

Query: 161 LNMKTHTHQWLVSEDDVAFAIAKTMPQLRHLQIMGIYITNNALLAILDGCPLLEYLDLRA 220
            NMK +     +  D+ AFAIA+TMP L HLQ+ G  +TN  LLAILDGCP LE LDLR 
Sbjct: 175 FNMKGYRRP-HIECDEEAFAIAETMPTLHHLQLFGNKLTNEGLLAILDGCPHLESLDLRQ 233

Query: 221 CHLLDLSGSLGKKCRERIKVVRLP 244
           C  ++L+GSLGK+C E+IK +RLP
Sbjct: 234 CFNVNLAGSLGKRCAEQIKELRLP 257



 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 57/133 (42%), Gaps = 49/133 (36%)

Query: 1   MLEELDISLTYL--SEDSFEAI------------------------DDETFAIAKTMPV- 33
            LEELDIS++    + D  EA+                        D+E FAIA+TMP  
Sbjct: 142 QLEELDISISSFNPTRDPLEAVGRCCRHLKTLKFNMKGYRRPHIECDEEAFAIAETMPTL 201

Query: 34  ---QIMGNYICNDALLTILDGCPLLEYLRGTSKLRRIHVAKCPGISERGLLSK------- 83
              Q+ GN + N+ LL ILDGCP LE L     LR     +C  ++  G L K       
Sbjct: 202 HHLQLFGNKLTNEGLLAILDGCPHLESL----DLR-----QCFNVNLAGSLGKRCAEQIK 252

Query: 84  ---LPCICVAKCP 93
              LPC     CP
Sbjct: 253 ELRLPCDPTDDCP 265


>Glyma06g10680.3 
          Length = 321

 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 66/120 (55%)

Query: 122 EIAKKFPLLEELGISLTPLLSEDFLEAIGRSCPLLKTLKLNMKTHTHQWLVSEDDVAFAI 181
           +IA +  ++  L +S    +    LE IG++C LL+ L  NM          +DD A+AI
Sbjct: 124 QIAGRLSMISFLDVSYCIKIGPYALEMIGKNCKLLEGLCRNMHPLDTAEKPHQDDEAYAI 183

Query: 182 AKTMPQLRHLQIMGIYITNNALLAILDGCPLLEYLDLRACHLLDLSGSLGKKCRERIKVV 241
           A TMP+L+HL++    I+ + +L IL  CP LE+LD R C  + L     K+   ++KV+
Sbjct: 184 ASTMPKLKHLEMAYHLISTSGVLQILANCPKLEFLDQRGCWGVTLDHMFLKQKFPKLKVL 243


>Glyma06g10680.2 
          Length = 321

 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 66/120 (55%)

Query: 122 EIAKKFPLLEELGISLTPLLSEDFLEAIGRSCPLLKTLKLNMKTHTHQWLVSEDDVAFAI 181
           +IA +  ++  L +S    +    LE IG++C LL+ L  NM          +DD A+AI
Sbjct: 124 QIAGRLSMISFLDVSYCIKIGPYALEMIGKNCKLLEGLCRNMHPLDTAEKPHQDDEAYAI 183

Query: 182 AKTMPQLRHLQIMGIYITNNALLAILDGCPLLEYLDLRACHLLDLSGSLGKKCRERIKVV 241
           A TMP+L+HL++    I+ + +L IL  CP LE+LD R C  + L     K+   ++KV+
Sbjct: 184 ASTMPKLKHLEMAYHLISTSGVLQILANCPKLEFLDQRGCWGVTLDHMFLKQKFPKLKVL 243


>Glyma06g10680.1 
          Length = 321

 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 66/120 (55%)

Query: 122 EIAKKFPLLEELGISLTPLLSEDFLEAIGRSCPLLKTLKLNMKTHTHQWLVSEDDVAFAI 181
           +IA +  ++  L +S    +    LE IG++C LL+ L  NM          +DD A+AI
Sbjct: 124 QIAGRLSMISFLDVSYCIKIGPYALEMIGKNCKLLEGLCRNMHPLDTAEKPHQDDEAYAI 183

Query: 182 AKTMPQLRHLQIMGIYITNNALLAILDGCPLLEYLDLRACHLLDLSGSLGKKCRERIKVV 241
           A TMP+L+HL++    I+ + +L IL  CP LE+LD R C  + L     K+   ++KV+
Sbjct: 184 ASTMPKLKHLEMAYHLISTSGVLQILANCPKLEFLDQRGCWGVTLDHMFLKQKFPKLKVL 243


>Glyma04g10850.2 
          Length = 321

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 66/120 (55%)

Query: 122 EIAKKFPLLEELGISLTPLLSEDFLEAIGRSCPLLKTLKLNMKTHTHQWLVSEDDVAFAI 181
           +IA +  ++  L +S    +    LE IG++C LL+ L  NM          +DD A+AI
Sbjct: 124 QIAGRLSMISFLDVSYCIKIGPYALEMIGKNCKLLEGLCRNMHPLDTASKPFQDDEAYAI 183

Query: 182 AKTMPQLRHLQIMGIYITNNALLAILDGCPLLEYLDLRACHLLDLSGSLGKKCRERIKVV 241
           A TMP+L+HL++    I+ + +L IL  CP LE+LD R C  + L     K+   ++KV+
Sbjct: 184 ASTMPKLKHLEMAYHLISTSGVLQILANCPKLEFLDQRGCWGVTLDHMFLKQKFPKLKVL 243


>Glyma04g10850.1 
          Length = 321

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 66/120 (55%)

Query: 122 EIAKKFPLLEELGISLTPLLSEDFLEAIGRSCPLLKTLKLNMKTHTHQWLVSEDDVAFAI 181
           +IA +  ++  L +S    +    LE IG++C LL+ L  NM          +DD A+AI
Sbjct: 124 QIAGRLSMISFLDVSYCIKIGPYALEMIGKNCKLLEGLCRNMHPLDTASKPFQDDEAYAI 183

Query: 182 AKTMPQLRHLQIMGIYITNNALLAILDGCPLLEYLDLRACHLLDLSGSLGKKCRERIKVV 241
           A TMP+L+HL++    I+ + +L IL  CP LE+LD R C  + L     K+   ++KV+
Sbjct: 184 ASTMPKLKHLEMAYHLISTSGVLQILANCPKLEFLDQRGCWGVTLDHMFLKQKFPKLKVL 243


>Glyma02g36660.1 
          Length = 306

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 14/123 (11%)

Query: 113 PEISERGLLEIAKKFPLLEELGISLTPLLSEDFLEAIGRSCPLLKTLKLNMKTH----TH 168
           P +++  +  IA   P L EL IS    ++ + L  IGR+CP LK LK N+        H
Sbjct: 129 PRVTDDSISRIALSCPKLRELDISYCYEITHESLVLIGRNCPNLKVLKRNLMNWLDPSQH 188

Query: 169 QWLVSED----------DVAFAIAKTMPQLRHLQIMGIYITNNALLAILDGCPLLEYLDL 218
           + +V +D          D A AIA +MP L  L+I    +T   L +I  GCP LE+LDL
Sbjct: 189 RGIVPDDYLNACPQDGDDEAAAIANSMPGLEQLEIRFSKLTAKGLNSICQGCPNLEFLDL 248

Query: 219 RAC 221
             C
Sbjct: 249 SGC 251


>Glyma02g36660.2 
          Length = 296

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 14/123 (11%)

Query: 113 PEISERGLLEIAKKFPLLEELGISLTPLLSEDFLEAIGRSCPLLKTLKLNMKTH----TH 168
           P +++  +  IA   P L EL IS    ++ + L  IGR+CP LK LK N+        H
Sbjct: 119 PRVTDDSISRIALSCPKLRELDISYCYEITHESLVLIGRNCPNLKVLKRNLMNWLDPSQH 178

Query: 169 QWLVSED----------DVAFAIAKTMPQLRHLQIMGIYITNNALLAILDGCPLLEYLDL 218
           + +V +D          D A AIA +MP L  L+I    +T   L +I  GCP LE+LDL
Sbjct: 179 RGIVPDDYLNACPQDGDDEAAAIANSMPGLEQLEIRFSKLTAKGLNSICQGCPNLEFLDL 238

Query: 219 RAC 221
             C
Sbjct: 239 SGC 241


>Glyma17g02300.1 
          Length = 584

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 31/244 (12%)

Query: 7   ISLTYLSEDSFEAIDDETFAIAKTMPVQIMGNYICNDALLTILDGCPLLEYLRGTSKLRR 66
           + L + S  S + +            + + G Y+ +  L  +   C  LE L        
Sbjct: 119 LGLIWCSNVSSDGLTSLARKCTSLKALDLQGCYVGDQGLAAVGQCCKQLEDL-------- 170

Query: 67  IHVAKCPGISERGLL-------SKLPCICVAKCPEISERGL--LSKLCR---IRVAKSPE 114
            ++  C G+++ GL+         L  + VA C +I++  +  +   CR        S  
Sbjct: 171 -NLRFCEGLTDTGLVELALGVGKSLKSLGVAACAKITDISMEAVGSHCRSLETLSLDSEC 229

Query: 115 ISERGLLEIAKKFPLLEELGISLTPLLSEDFLEAIGRSCPLLKTLKLNMKTHTHQWLVSE 174
           I  +GLL +A+  P L+ L +    + ++D L+A+G +C  L+ L L      + +    
Sbjct: 230 IHNKGLLAVAQGCPTLKVLKLQCINV-TDDALQAVGANCLSLELLAL------YSFQRFT 282

Query: 175 DDVAFAIAKTMPQLRHLQIMGIY-ITNNALLAILDGCPLLEYLDLRACHLLDLSG--SLG 231
           D     I     +L++L ++  Y I++  L AI +GC  L +L++  CH +   G   +G
Sbjct: 283 DKGLRGIGNGCKKLKNLTLIDCYFISDKGLEAIANGCKELTHLEVNGCHNIGTLGLEYIG 342

Query: 232 KKCR 235
           + C+
Sbjct: 343 RSCQ 346