Miyakogusa Predicted Gene
- Lj2g3v2017700.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2017700.2 Non Chatacterized Hit- tr|I3SEL6|I3SEL6_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,82,2e-18,BAH,Bromo adjacent homology (BAH) domain;
TFIIS_CENTRAL,Transcription elongation factor S-II,
centra,CUFF.38450.2
(385 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma08g01770.1 613 e-175
Glyma01g42920.1 608 e-174
Glyma05g37830.2 603 e-173
Glyma11g02560.1 603 e-172
Glyma05g37830.1 602 e-172
Glyma01g42920.2 521 e-148
Glyma19g31210.1 215 6e-56
Glyma04g35100.2 79 8e-15
Glyma04g35100.1 79 8e-15
>Glyma08g01770.1
Length = 611
Score = 613 bits (1581), Expect = e-175, Method: Compositional matrix adjust.
Identities = 295/385 (76%), Positives = 327/385 (84%), Gaps = 1/385 (0%)
Query: 1 MVTGQWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPK 60
MVTGQWFYRPEEAE+KGGGSW SRDTRELFYSFH DD+PAESVMHKCVVHF+P+HKQLP
Sbjct: 155 MVTGQWFYRPEEAERKGGGSWQSRDTRELFYSFHRDDVPAESVMHKCVVHFVPIHKQLPN 214
Query: 61 RKEHPGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLDVEPEDAPD 120
RK+HPGF+VQKVYDTVERKLW LTDKDYED KQQEIDELV+KT++R+GE LD+EPE+
Sbjct: 215 RKQHPGFIVQKVYDTVERKLWKLTDKDYEDNKQQEIDELVQKTLKRLGELLDIEPEEPVA 274
Query: 121 DQEDLVKNKRSLRRKSVSPPDVSKEEEGVPKSDQHPKPETPGSCINNASEHYRILVSFNA 180
DQEDL+KNKR LR+KS+SP DVSKEEE K DQ KPETP SCINNASEHYRILV FN
Sbjct: 275 DQEDLMKNKRILRKKSISPLDVSKEEETTRKGDQPLKPETPWSCINNASEHYRILVDFNV 334
Query: 181 LTGDVQRDKWLERSLQHLQYMCSSDDSTERDNKGSNVNCDEIKHQNSNTSSEIANDCQDK 240
LTGD RDK LE+ LQ +++M +SDDS +R+ KG N N D + ++N S E N+C+DK
Sbjct: 335 LTGDTHRDKCLEKLLQSVEFMFNSDDSIKREEKG-NDNSDATNNGSNNKSLESVNECKDK 393
Query: 241 GQKSSKPFKWPDAAVSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLKNNAFLARRLLNG 300
QKSSKPF WPD AV A+VALEKASHD SSD+QKYNQKLRQL FNLKNNA LARRLLNG
Sbjct: 394 VQKSSKPFVWPDDAVPAVVALEKASHDTLSSDYQKYNQKLRQLVFNLKNNAILARRLLNG 453
Query: 301 ELEPSKILNMTYSELKEGLTAEEKTKKEPDESEHMQMTDARCSRCMEFKVGLRDIIHAGH 360
ELEPSKILNMT +ELKEGLTAEE TKKEPDES+HMQMT ARC RC E KVGLRDIIHAGH
Sbjct: 454 ELEPSKILNMTPNELKEGLTAEETTKKEPDESQHMQMTGARCRRCTEGKVGLRDIIHAGH 513
Query: 361 NDRYQLECVSCGNSWYASRDEVSSL 385
DRYQLEC CG SW+ASRDEVS L
Sbjct: 514 GDRYQLECTGCGYSWFASRDEVSEL 538
>Glyma01g42920.1
Length = 522
Score = 608 bits (1567), Expect = e-174, Method: Compositional matrix adjust.
Identities = 293/384 (76%), Positives = 328/384 (85%)
Query: 2 VTGQWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPKR 61
VTGQWFYRPEEAEKKGGG+W S DTRELFYSFH DD+PAE+VMHKCVVHF+P HKQLPKR
Sbjct: 124 VTGQWFYRPEEAEKKGGGNWQSCDTRELFYSFHRDDVPAEAVMHKCVVHFVPRHKQLPKR 183
Query: 62 KEHPGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLDVEPEDAPDD 121
K+HPGF+VQKVYDTVERKLW L+DKDYEDIKQQEID LV+KT++RIGE LD+EPE+APDD
Sbjct: 184 KDHPGFIVQKVYDTVERKLWRLSDKDYEDIKQQEIDVLVEKTLQRIGELLDLEPEEAPDD 243
Query: 122 QEDLVKNKRSLRRKSVSPPDVSKEEEGVPKSDQHPKPETPGSCINNASEHYRILVSFNAL 181
ED +KN++SLRRKSVSP DVSKEEE KS+QHPK ETP CI N SE+YRILV FNAL
Sbjct: 244 DEDQLKNRKSLRRKSVSPLDVSKEEEETLKSEQHPKSETPAGCITNPSEYYRILVEFNAL 303
Query: 182 TGDVQRDKWLERSLQHLQYMCSSDDSTERDNKGSNVNCDEIKHQNSNTSSEIANDCQDKG 241
TGD RDKWLER LQ + YMC S+DS ERD NVN DEI + + SSE AN CQDK
Sbjct: 304 TGDSHRDKWLERLLQRIHYMCDSNDSKERDKGLGNVNSDEINGGSKHRSSESANVCQDKV 363
Query: 242 QKSSKPFKWPDAAVSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLKNNAFLARRLLNGE 301
QKSSK F WPDA VSA+VALEKASHDA SSD KYNQKLRQL FN + NA LARRLL+GE
Sbjct: 364 QKSSKSFIWPDAGVSAMVALEKASHDALSSDSMKYNQKLRQLAFNFQKNAVLARRLLSGE 423
Query: 302 LEPSKILNMTYSELKEGLTAEEKTKKEPDESEHMQMTDARCSRCMEFKVGLRDIIHAGHN 361
LEPSKILNMT +ELKEGL AEEKTK+EPD+ +H+QMTDARCS+CM+ KV LR+II AG+N
Sbjct: 424 LEPSKILNMTPNELKEGLVAEEKTKEEPDKIQHLQMTDARCSKCMDCKVALREIIQAGNN 483
Query: 362 DRYQLECVSCGNSWYASRDEVSSL 385
+RYQLECVSCG+SWYASRDEVS L
Sbjct: 484 ERYQLECVSCGHSWYASRDEVSML 507
>Glyma05g37830.2
Length = 574
Score = 603 bits (1555), Expect = e-173, Method: Compositional matrix adjust.
Identities = 291/385 (75%), Positives = 328/385 (85%), Gaps = 1/385 (0%)
Query: 1 MVTGQWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPK 60
MVTGQWFYRPEEAE+KGGGSW S DTRELFYSFH DD+PAESVMHKCVVHF+P+HKQLP
Sbjct: 156 MVTGQWFYRPEEAERKGGGSWQSCDTRELFYSFHRDDVPAESVMHKCVVHFVPIHKQLPN 215
Query: 61 RKEHPGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLDVEPEDAPD 120
RK+HPGF+VQKVYDTVERKLW LTDKDYED KQQEIDELV+KT++R+G+ LD+EPE+
Sbjct: 216 RKQHPGFIVQKVYDTVERKLWKLTDKDYEDNKQQEIDELVQKTLQRLGKLLDIEPEEPVA 275
Query: 121 DQEDLVKNKRSLRRKSVSPPDVSKEEEGVPKSDQHPKPETPGSCINNASEHYRILVSFNA 180
DQEDL+KNKR LR+KS+SP DVSKEEE + DQ KPETP SC+NNASEHYRILV FNA
Sbjct: 276 DQEDLMKNKRILRKKSISPLDVSKEEETTRQGDQPLKPETPWSCVNNASEHYRILVDFNA 335
Query: 181 LTGDVQRDKWLERSLQHLQYMCSSDDSTERDNKGSNVNCDEIKHQNSNTSSEIANDCQDK 240
LTGD RDK LE+ LQ +Q+M +SDDS +++ KG N N + ++N S E AN+C+DK
Sbjct: 336 LTGDTHRDKCLEKLLQSVQFMFNSDDSIKKEEKG-NDNSGAANNGSNNKSLESANECEDK 394
Query: 241 GQKSSKPFKWPDAAVSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLKNNAFLARRLLNG 300
QKSSKPF WPD AV A+VALEKASHD SSD+QKYNQKLRQL FNLKNNA LARRLLNG
Sbjct: 395 VQKSSKPFVWPDDAVPAVVALEKASHDTLSSDYQKYNQKLRQLVFNLKNNAILARRLLNG 454
Query: 301 ELEPSKILNMTYSELKEGLTAEEKTKKEPDESEHMQMTDARCSRCMEFKVGLRDIIHAGH 360
ELEPS ILNMT +ELKEGLTAEE TKKEPDES+HMQMT ARC RC E KVGLRDIIHAGH
Sbjct: 455 ELEPSIILNMTPNELKEGLTAEETTKKEPDESQHMQMTGARCHRCTEGKVGLRDIIHAGH 514
Query: 361 NDRYQLECVSCGNSWYASRDEVSSL 385
DRYQLEC +CG+SW+ASRDEVS L
Sbjct: 515 GDRYQLECTACGHSWFASRDEVSEL 539
>Glyma11g02560.1
Length = 522
Score = 603 bits (1554), Expect = e-172, Method: Compositional matrix adjust.
Identities = 292/382 (76%), Positives = 326/382 (85%), Gaps = 1/382 (0%)
Query: 2 VTGQWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPKR 61
VTGQWFYRPEEAEKKGGG+W S DTRELFYSFH DD+PAE+VMHKCVVHF+P HKQLPKR
Sbjct: 125 VTGQWFYRPEEAEKKGGGNWQSCDTRELFYSFHRDDVPAEAVMHKCVVHFVPRHKQLPKR 184
Query: 62 KEHPGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLDVEPEDAPDD 121
K+HPGF+VQKVYDTVERKLW LTDKDYE+ KQQEID LV+KT +RIGE LD+EPE+APDD
Sbjct: 185 KDHPGFIVQKVYDTVERKLWRLTDKDYEEFKQQEIDVLVEKTQQRIGELLDLEPEEAPDD 244
Query: 122 QEDLVKNKRSLRRKSVSPPDVSKEEEGVPKSDQHPKPETPGSCINNASEHYRILVSFNAL 181
D +KNK+S RRKSVSP DVSKEEE KS+QHPK ETP CI N SE+YRILV FNAL
Sbjct: 245 DGDQLKNKKSFRRKSVSPLDVSKEEEETLKSEQHPKSETPTGCITNGSEYYRILVDFNAL 304
Query: 182 TGDVQRDKWLERSLQHLQYMCSSDDSTERDNKGSNVNCDEIKHQNSNTSSEIANDCQDKG 241
TGD RDKWLER LQ +QYMC S+DS ERD N N DEI +++ + SSE A DCQDK
Sbjct: 305 TGDSHRDKWLERLLQRIQYMCDSNDSKERDKGLGNANSDEINNESKHRSSESATDCQDKV 364
Query: 242 QKSSKPFKWPDAAVSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLKNNAFLARRLLNGE 301
QKSSK F WPD AVSA+VALEKASHDA SSD KYNQKLRQL FN + NA LARRLL+GE
Sbjct: 365 QKSSKSFNWPDVAVSAMVALEKASHDALSSDSMKYNQKLRQLAFNFQKNAVLARRLLSGE 424
Query: 302 LEPSKILNMTYSELKEGLTAEEKTKKEPDESEHMQMTDARCSRCMEFKVGLRDIIHAGHN 361
LEPSKILNMT +ELKEGL AEEKT KEPDE++H+QMTDARCS+CM+ KVGLR+II AG+N
Sbjct: 425 LEPSKILNMTPNELKEGLVAEEKT-KEPDETQHLQMTDARCSKCMDCKVGLREIIQAGNN 483
Query: 362 DRYQLECVSCGNSWYASRDEVS 383
+RYQLECVSCG+SWYASRDEVS
Sbjct: 484 ERYQLECVSCGHSWYASRDEVS 505
>Glyma05g37830.1
Length = 584
Score = 602 bits (1553), Expect = e-172, Method: Compositional matrix adjust.
Identities = 291/385 (75%), Positives = 328/385 (85%), Gaps = 1/385 (0%)
Query: 1 MVTGQWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPK 60
MVTGQWFYRPEEAE+KGGGSW S DTRELFYSFH DD+PAESVMHKCVVHF+P+HKQLP
Sbjct: 156 MVTGQWFYRPEEAERKGGGSWQSCDTRELFYSFHRDDVPAESVMHKCVVHFVPIHKQLPN 215
Query: 61 RKEHPGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLDVEPEDAPD 120
RK+HPGF+VQKVYDTVERKLW LTDKDYED KQQEIDELV+KT++R+G+ LD+EPE+
Sbjct: 216 RKQHPGFIVQKVYDTVERKLWKLTDKDYEDNKQQEIDELVQKTLQRLGKLLDIEPEEPVA 275
Query: 121 DQEDLVKNKRSLRRKSVSPPDVSKEEEGVPKSDQHPKPETPGSCINNASEHYRILVSFNA 180
DQEDL+KNKR LR+KS+SP DVSKEEE + DQ KPETP SC+NNASEHYRILV FNA
Sbjct: 276 DQEDLMKNKRILRKKSISPLDVSKEEETTRQGDQPLKPETPWSCVNNASEHYRILVDFNA 335
Query: 181 LTGDVQRDKWLERSLQHLQYMCSSDDSTERDNKGSNVNCDEIKHQNSNTSSEIANDCQDK 240
LTGD RDK LE+ LQ +Q+M +SDDS +++ KG N N + ++N S E AN+C+DK
Sbjct: 336 LTGDTHRDKCLEKLLQSVQFMFNSDDSIKKEEKG-NDNSGAANNGSNNKSLESANECEDK 394
Query: 241 GQKSSKPFKWPDAAVSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLKNNAFLARRLLNG 300
QKSSKPF WPD AV A+VALEKASHD SSD+QKYNQKLRQL FNLKNNA LARRLLNG
Sbjct: 395 VQKSSKPFVWPDDAVPAVVALEKASHDTLSSDYQKYNQKLRQLVFNLKNNAILARRLLNG 454
Query: 301 ELEPSKILNMTYSELKEGLTAEEKTKKEPDESEHMQMTDARCSRCMEFKVGLRDIIHAGH 360
ELEPS ILNMT +ELKEGLTAEE TKKEPDES+HMQMT ARC RC E KVGLRDIIHAGH
Sbjct: 455 ELEPSIILNMTPNELKEGLTAEETTKKEPDESQHMQMTGARCHRCTEGKVGLRDIIHAGH 514
Query: 361 NDRYQLECVSCGNSWYASRDEVSSL 385
DRYQLEC +CG+SW+ASRDEVS L
Sbjct: 515 GDRYQLECTACGHSWFASRDEVSEL 539
>Glyma01g42920.2
Length = 472
Score = 521 bits (1341), Expect = e-148, Method: Compositional matrix adjust.
Identities = 254/336 (75%), Positives = 284/336 (84%)
Query: 2 VTGQWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPKR 61
VTGQWFYRPEEAEKKGGG+W S DTRELFYSFH DD+PAE+VMHKCVVHF+P HKQLPKR
Sbjct: 124 VTGQWFYRPEEAEKKGGGNWQSCDTRELFYSFHRDDVPAEAVMHKCVVHFVPRHKQLPKR 183
Query: 62 KEHPGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLDVEPEDAPDD 121
K+HPGF+VQKVYDTVERKLW L+DKDYEDIKQQEID LV+KT++RIGE LD+EPE+APDD
Sbjct: 184 KDHPGFIVQKVYDTVERKLWRLSDKDYEDIKQQEIDVLVEKTLQRIGELLDLEPEEAPDD 243
Query: 122 QEDLVKNKRSLRRKSVSPPDVSKEEEGVPKSDQHPKPETPGSCINNASEHYRILVSFNAL 181
ED +KN++SLRRKSVSP DVSKEEE KS+QHPK ETP CI N SE+YRILV FNAL
Sbjct: 244 DEDQLKNRKSLRRKSVSPLDVSKEEEETLKSEQHPKSETPAGCITNPSEYYRILVEFNAL 303
Query: 182 TGDVQRDKWLERSLQHLQYMCSSDDSTERDNKGSNVNCDEIKHQNSNTSSEIANDCQDKG 241
TGD RDKWLER LQ + YMC S+DS ERD NVN DEI + + SSE AN CQDK
Sbjct: 304 TGDSHRDKWLERLLQRIHYMCDSNDSKERDKGLGNVNSDEINGGSKHRSSESANVCQDKV 363
Query: 242 QKSSKPFKWPDAAVSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLKNNAFLARRLLNGE 301
QKSSK F WPDA VSA+VALEKASHDA SSD KYNQKLRQL FN + NA LARRLL+GE
Sbjct: 364 QKSSKSFIWPDAGVSAMVALEKASHDALSSDSMKYNQKLRQLAFNFQKNAVLARRLLSGE 423
Query: 302 LEPSKILNMTYSELKEGLTAEEKTKKEPDESEHMQM 337
LEPSKILNMT +ELKEGL AEEKTK+EPD+ +H+Q+
Sbjct: 424 LEPSKILNMTPNELKEGLVAEEKTKEEPDKIQHLQV 459
>Glyma19g31210.1
Length = 221
Score = 215 bits (548), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 99/133 (74%), Positives = 119/133 (89%)
Query: 1 MVTGQWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPK 60
+VTGQWFYRPEEAEKKGGG+W S D+RELFYSFH DD+ AE+VMHKCVVHF+P +KQLPK
Sbjct: 88 VVTGQWFYRPEEAEKKGGGNWKSCDSRELFYSFHCDDVHAEAVMHKCVVHFVPQNKQLPK 147
Query: 61 RKEHPGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLDVEPEDAPD 120
RK+HPGF+VQKVYD VE+KLW L DKDYEDIKQQEID LV+KT++RIGE +D+EP++A D
Sbjct: 148 RKDHPGFIVQKVYDNVEKKLWRLGDKDYEDIKQQEIDVLVEKTLQRIGELIDIEPDEALD 207
Query: 121 DQEDLVKNKRSLR 133
D ED +KNK+ L+
Sbjct: 208 DGEDQMKNKKKLK 220
>Glyma04g35100.2
Length = 1502
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 5/110 (4%)
Query: 6 WFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPKRKEHP 65
W YR E + GG ++ E+FY+FH D+I AES++H C V F+ +LP
Sbjct: 59 WLYRSIEVKLNKGGPLVAA-PNEIFYTFHKDEIDAESLLHPCKVAFLRKGAELPSGISS- 116
Query: 66 GFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLDVEP 115
FV ++VYD + LW L D+DY + Q+E+D+L+ +T +G V+P
Sbjct: 117 -FVCRRVYDIANKCLWWLNDQDYINDCQEEVDQLLYRTC--VGMHAAVQP 163
>Glyma04g35100.1
Length = 1765
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 5/110 (4%)
Query: 6 WFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPKRKEHP 65
W YR E + GG ++ E+FY+FH D+I AES++H C V F+ +LP
Sbjct: 238 WLYRSIEVKLNKGGPLVAA-PNEIFYTFHKDEIDAESLLHPCKVAFLRKGAELPSGISS- 295
Query: 66 GFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLDVEP 115
FV ++VYD + LW L D+DY + Q+E+D+L+ +T +G V+P
Sbjct: 296 -FVCRRVYDIANKCLWWLNDQDYINDCQEEVDQLLYRTC--VGMHAAVQP 342