Miyakogusa Predicted Gene

Lj2g3v1989100.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1989100.1 tr|A9TEH6|A9TEH6_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_169610,49.3,0.00000000009,seg,NULL;
coiled-coil,NULL,CUFF.38297.1
         (279 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g41420.1                                                       263   2e-70
Glyma01g41420.2                                                       234   8e-62
Glyma01g41410.1                                                       142   4e-34
Glyma11g04010.1                                                       107   1e-23

>Glyma01g41420.1 
          Length = 325

 Score =  263 bits (672), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 145/246 (58%), Positives = 167/246 (67%), Gaps = 40/246 (16%)

Query: 21  AIPMLNEVMSATRGATDAFSGVSRHVNSSLKKFGAKNIEVXXXXXXXXXXXXXXXLAVKP 80
           AIPMLN+VMSATRGATDAFSGVSRHVN+SL+K GAKNIEV               LAVKP
Sbjct: 101 AIPMLNQVMSATRGATDAFSGVSRHVNTSLRKLGAKNIEVGIGCGVGFGHGFGVGLAVKP 160

Query: 81  GVLNQIQSCVAVAVTKMMMKFGLTPSLPFSQSAIPASLQSATGTFNTNKISAGSMVQLAT 140
            VLNQIQS +   +TK+M K GL+P+LPFSQ                             
Sbjct: 161 VVLNQIQSSLVDVMTKVMTKIGLSPNLPFSQ----------------------------- 191

Query: 141 RSTDHISQSPAGSQPVQIGSAFENTALKGTSVDSALKGTSVDSAFGSRTEKVLNNFLQSP 200
              D +SQ   GS+PVQIGS FEN         + L+ T+VDSAFGSRTEKV++NFLQ+P
Sbjct: 192 --VDQVSQGLPGSRPVQIGSDFEN---------NPLRVTAVDSAFGSRTEKVISNFLQNP 240

Query: 201 VLKGEGGGSDEAAKRLQSENKILQMVLKHQQIIEELVEENEKLRQILVEDLKVPSSKLHA 260
           +LKGEGGG DEA  RLQSE  +LQMVLKHQQIIEELVEENE+LR+IL+EDLK+PSSKL A
Sbjct: 241 LLKGEGGGLDEAVGRLQSERTMLQMVLKHQQIIEELVEENERLRRILMEDLKIPSSKLEA 300

Query: 261 SHSDRN 266
           S S RN
Sbjct: 301 SSSGRN 306


>Glyma01g41420.2 
          Length = 243

 Score =  234 bits (597), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 144/192 (75%), Gaps = 9/192 (4%)

Query: 21  AIPMLNEVMSATRGATDAFSGVSRHVNSSLKKFGAKNIEVXXXXXXXXXXXXXXXLAVKP 80
           AIPMLN+VMSATRGATDAFSGVSRHVN+SL+K GAKNIEV               LAVKP
Sbjct: 48  AIPMLNQVMSATRGATDAFSGVSRHVNTSLRKLGAKNIEVGIGCGVGFGHGFGVGLAVKP 107

Query: 81  GVLNQIQSCVAVAVTKMMMKFGLTPSLPFSQSAIPASLQSATGTFNTNKISAGSMVQLAT 140
            VLNQIQS +   +TK+M K GL+P+LPFSQ A P SLQSA  T NTN+ SAGSM+QLAT
Sbjct: 108 VVLNQIQSSLVDVMTKVMTKIGLSPNLPFSQGAFPPSLQSAASTVNTNQSSAGSMMQLAT 167

Query: 141 RSTDHISQSPAGSQPVQIGSAFENTALKGTSVDSALKGTSVDSAFGSRTEKVLNNFLQSP 200
           +S D +SQ   GS+PVQIGS FEN         + L+ T+VDSAFGSRTEKV++NFLQ+P
Sbjct: 168 KSVDQVSQGLPGSRPVQIGSDFEN---------NPLRVTAVDSAFGSRTEKVISNFLQNP 218

Query: 201 VLKGEGGGSDEA 212
           +LKGEGGG DEA
Sbjct: 219 LLKGEGGGLDEA 230


>Glyma01g41410.1 
          Length = 215

 Score =  142 bits (358), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/269 (39%), Positives = 140/269 (52%), Gaps = 69/269 (25%)

Query: 1   MDLGRFFKPKNPQTSLPKPCAIPMLNEVMSATRGATDAFSGVSRHVNSSLKKFGAKNIE- 59
           MD  RFFKP+ PQT   K  AIP L++VMS T+GATDAF GVS    +S +K G  +I  
Sbjct: 1   MDWTRFFKPQTPQTP-QKTSAIPTLDQVMSGTKGATDAFYGVS----NSFRKLGTSSIPG 55

Query: 60  VXXXXXXXXXXXXXXXLAVKPGVLNQIQSCVAVAVTKMMMKFGLTPSLPFSQSAIP---- 115
           +               L+++ GV NQ+QS +A  +TKM+   GL P LPF Q A+P    
Sbjct: 56  MAVGYGIGFSHGFGLGLSMRSGV-NQLQSSLAEPMTKMI---GLIPGLPFGQRALPMPTS 111

Query: 116 ---------ASLQSATGTFNTNKISAGSMVQLATRSTDHISQSPAGSQPVQIGSAFENTA 166
                    + +Q AT +F+  +IS  SM+QLA++S   ISQ   GSQP +I SAF+N  
Sbjct: 112 SKSRQISAESIMQRATKSFD--QISQESMMQLASKSASQISQGLVGSQPTKIDSAFDNKV 169

Query: 167 LKGTSVDSALKGTSVDSAFGSRTEKVLNNFLQSPVLKGEGGGSDEAAKRLQSENKILQMV 226
           LK  +VDSA           ++TEKV+                                 
Sbjct: 170 LKRAAVDSASH---------TQTEKVM--------------------------------- 187

Query: 227 LKHQQIIEELVEENEKLRQIL-VEDLKVP 254
            K QQII+ELVEENEKLRQIL   +LK+P
Sbjct: 188 -KQQQIIDELVEENEKLRQILQANNLKIP 215


>Glyma11g04010.1 
          Length = 109

 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 65/92 (70%), Gaps = 8/92 (8%)

Query: 21  AIPMLNEVMSATRGATDAFSGVSRHVNSSLKKFGAKNIEVXXXXXXXXXXXXXXXLAVKP 80
           AIPMLN+VMSATRGATDAFSGVSRHVN+SL+K GA N+E                LAVKP
Sbjct: 17  AIPMLNQVMSATRGATDAFSGVSRHVNTSLRKLGANNVE--------VGVGCGVGLAVKP 68

Query: 81  GVLNQIQSCVAVAVTKMMMKFGLTPSLPFSQS 112
            VLNQIQSC    +TKMM K GL+PSL FS+ 
Sbjct: 69  VVLNQIQSCFVDVMTKMMTKIGLSPSLAFSRC 100