Miyakogusa Predicted Gene

Lj2g3v1988980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1988980.1 tr|G7JYL5|G7JYL5_MEDTR DNA repair endonuclease
UVH1 OS=Medicago truncatula GN=MTR_5g013480 PE=4
SV=1,85.26,0,seg,NULL; ERCC4 domain,ERCC4 domain; no description,DNA
repair nuclease, XPF-type/Helicase; coiled-c,CUFF.38284.1
         (956 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g04110.1                                                       915   0.0  
Glyma11g04120.1                                                       414   e-115
Glyma01g41300.1                                                       222   1e-57
Glyma17g29400.1                                                       133   1e-30
Glyma12g30370.1                                                       129   2e-29
Glyma17g33240.1                                                       105   2e-22

>Glyma11g04110.1 
          Length = 604

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/603 (75%), Positives = 488/603 (80%), Gaps = 55/603 (9%)

Query: 409 LREEVLAEGEDTDNGIVLVACKDEMSCLQLEECITNSPKK-------------------- 448
           LREEVLAEGEDT+NGIVLVACKDE SCLQLEECITN PKK                    
Sbjct: 2   LREEVLAEGEDTNNGIVLVACKDERSCLQLEECITNGPKKFLLVDSQQDLKKLTFVLAYC 61

Query: 449 -----VMREEWAKYLLNKVQLRDIVHXXXXXXXXX--GFGILDGVTPIAPAQKMETSTIN 501
                VM EEW KYLLNKVQLRDIV+           GFGILDGVTPI P Q  ET++I+
Sbjct: 62  LLFVKVMHEEWKKYLLNKVQLRDIVNKKKKPKDPKPKGFGILDGVTPIKPVQSAETTSIS 121

Query: 502 KQEHDALLAAASELKKRVENVHVVEDTLQPDFSGQVRSKGKRKLGNRNSPIIVDGLGAQT 561
           KQEHDALLAAAS+L+   EN HV EDT QPD  GQ R+K KRK+G RN P+I+DG G Q 
Sbjct: 122 KQEHDALLAAASKLRNIAENDHVGEDTPQPDSGGQGRAKRKRKVGIRNDPVILDGSGVQN 181

Query: 562 DNKDASTSEKTGMS----------------------------VDNMVLRRHTNPDSASGS 593
           +NK  STS+K GMS                            V+N+VLRRHTNPD+A+ +
Sbjct: 182 NNKAQSTSDKIGMSDSKNKIDEDETNPISAGRFCETMQGETSVENIVLRRHTNPDAAARN 241

Query: 594 GKPLPPVHFYALESDQPVLDILKPSIIIVYHPDMAFVREIEVYKAENPSKRLKVYFIFYE 653
           GK LPPV+FYALESDQP+LDILKPSI+IVYHPDM FVREIEVYKAENPSKRLKVYFIFYE
Sbjct: 242 GKSLPPVYFYALESDQPILDILKPSIVIVYHPDMTFVREIEVYKAENPSKRLKVYFIFYE 301

Query: 654 DSTEVQKFEASIRRENGAFESLIRQKSMMMIPVDQGGHCLGLNSTLEADLNTPQNSITRK 713
           DS+EVQKFEASIRRENGAFESLIRQKS+MMIPVDQ GH LGLNSTLE+DLNTPQN +TRK
Sbjct: 302 DSSEVQKFEASIRRENGAFESLIRQKSLMMIPVDQSGHSLGLNSTLESDLNTPQNFVTRK 361

Query: 714 AGGRKEVDKDMQVIVDMREFMSSLPNVLHQKGMRIIPVTLEVGDYILSPLICVERKSIQD 773
           AGGRKE +K+MQVIVDMREFMSSLPNVLHQKGM IIPVTLEVGDYILSPLICVERKSIQD
Sbjct: 362 AGGRKEAEKEMQVIVDMREFMSSLPNVLHQKGMNIIPVTLEVGDYILSPLICVERKSIQD 421

Query: 774 LFMSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNSIISKLSLL 833
           LFMSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNSIISKLSLL
Sbjct: 422 LFMSFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNSIISKLSLL 481

Query: 834 ALHFPRLRIIWSRSLHATAEIFASLKANQDEPDETKAMRVGVPSEEGIVEDDVRAENYNT 893
           ALHFPRLRIIWSRSLHATAEIFASLKANQDEPDETKA+RVGVPSEEGIVE+DVRAENYNT
Sbjct: 482 ALHFPRLRIIWSRSLHATAEIFASLKANQDEPDETKAIRVGVPSEEGIVENDVRAENYNT 541

Query: 894 SAVEFLRRLPGVTDSNYRAIMDGCTSXXXXXXXXXXXXXXXMGGHKAARTLREFLDAKYP 953
           SAVEFLRR PGVTDSNYRAIMDGC S               MGGHKAARTLR+FLDAKYP
Sbjct: 542 SAVEFLRRCPGVTDSNYRAIMDGCKSLAELALLPVEKLAELMGGHKAARTLRDFLDAKYP 601

Query: 954 TLL 956
           TLL
Sbjct: 602 TLL 604


>Glyma11g04120.1 
          Length = 287

 Score =  414 bits (1065), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/290 (72%), Positives = 222/290 (76%), Gaps = 15/290 (5%)

Query: 1   MVQFQEHIITELLEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MVQF EHIITELLED                                             
Sbjct: 1   MVQFHEHIITELLEDSNGGLVVLSSGLALSKLIASLLILHSSSQGTLLLLSPSSTSLKSK 60

Query: 61  XNFHLKTLNPQFYQIPSEITADLPAHHRHSLYTSGNAFFITARILIVDLLTNRLPTSKIA 120
             FHLKTLNPQFYQIP+EITADL A HRH+LYTSGNAFFIT RILIVDLLTN+LPTSKIA
Sbjct: 61  ITFHLKTLNPQFYQIPAEITADLHAPHRHALYTSGNAFFITPRILIVDLLTNKLPTSKIA 120

Query: 121 GIVLLNAHSISETSTEAFIVRIFRSLNRDAYVRAFSDKPHAMVSGFAKAERTMKCLFLRR 180
           GI++LNAHS+SETSTEAFIVRIFRSLNR AYVRAFSDKPHAMVSGFAKAERTMKCL +R+
Sbjct: 121 GIIILNAHSLSETSTEAFIVRIFRSLNRGAYVRAFSDKPHAMVSGFAKAERTMKCLHVRK 180

Query: 181 LHLWPRFQVYVSQELERDPPDVVDIRVPMTRYMVGIQKAIIEVMDACLKEMRKTNKVDIE 240
           LHLWPRFQVYVSQELERDPP+VVDIRVPM+RYMVGIQKAI+EVMDACLKEMRKTNKVD+E
Sbjct: 181 LHLWPRFQVYVSQELERDPPEVVDIRVPMSRYMVGIQKAIVEVMDACLKEMRKTNKVDVE 240

Query: 241 DLTVENGLFKSFDEIVRRQLDPIWHTLGKKTKQLVSDLKTLRKLLDYLVR 290
           DLTVENGLFKSFDEI               TKQLVSDLKTLRKLLDYLVR
Sbjct: 241 DLTVENGLFKSFDEI---------------TKQLVSDLKTLRKLLDYLVR 275


>Glyma01g41300.1 
          Length = 581

 Score =  222 bits (566), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 114/145 (78%), Positives = 120/145 (82%), Gaps = 22/145 (15%)

Query: 194 ELERDPPDVVDIRVPMTRYMVGIQKAIIEVMDACLKEMRKTNKVDIEDLTVENGLFKSFD 253
           ELERDPP+VVDIR           KAI E           TNKVD+ED TVENGLFKSFD
Sbjct: 182 ELERDPPEVVDIR-----------KAIAE-----------TNKVDVEDSTVENGLFKSFD 219

Query: 254 EIVRRQLDPIWHTLGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSESFRSVW 313
           EIVRRQLDPIWHTLGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSESFRSVW
Sbjct: 220 EIVRRQLDPIWHTLGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSESFRSVW 279

Query: 314 IFAEASYKIFDYAKKRVFHLVRSDG 338
           +FA ASY+IFDYAKKRVFHLV++DG
Sbjct: 280 LFAGASYQIFDYAKKRVFHLVKADG 304



 Score =  218 bits (554), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 112/150 (74%), Positives = 117/150 (78%), Gaps = 14/150 (9%)

Query: 807 KSFSFQSASDIGDDVTPNSIISKLSLLALHFPRLRIIWSRSLHATAEIFASLKANQDEPD 866
           +   + SASDIGDDVTPNSIISKLSLLALHFPRLRIIWSRSLHATAEIFASLKANQDEPD
Sbjct: 446 RKVQYPSASDIGDDVTPNSIISKLSLLALHFPRLRIIWSRSLHATAEIFASLKANQDEPD 505

Query: 867 ETKAMRVGVPSEEGIVEDDVRAENYNTSAVEFLRRLPGVTDSNYRAIMDGCTSXXXXXXX 926
           ETKA+RVGVPSEEGIVE+DVRAENYNTSAVEFLRRLPG              S       
Sbjct: 506 ETKAIRVGVPSEEGIVENDVRAENYNTSAVEFLRRLPG--------------SLAELALR 551

Query: 927 XXXXXXXXMGGHKAARTLREFLDAKYPTLL 956
                   MGGHKAARTLR+FLDAKYPTLL
Sbjct: 552 PVEKLAELMGGHKAARTLRDFLDAKYPTLL 581


>Glyma17g29400.1 
          Length = 98

 Score =  133 bits (334), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/96 (68%), Positives = 77/96 (80%)

Query: 81  ADLPAHHRHSLYTSGNAFFITARILIVDLLTNRLPTSKIAGIVLLNAHSISETSTEAFIV 140
           A+L    R SLYTS N FFIT+RILI+DL+ N+L TSKI GI++LN HS+S+TS EAFIV
Sbjct: 1   ANLVVSCRTSLYTSNNVFFITSRILIIDLINNKLRTSKIVGIIILNLHSLSDTSMEAFIV 60

Query: 141 RIFRSLNRDAYVRAFSDKPHAMVSGFAKAERTMKCL 176
            I +SLNR AYVR   DKPHAMVSGFAKA+RTMK L
Sbjct: 61  WILQSLNRGAYVRTLFDKPHAMVSGFAKAKRTMKFL 96


>Glyma12g30370.1 
          Length = 144

 Score =  129 bits (323), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/104 (61%), Positives = 73/104 (70%), Gaps = 28/104 (26%)

Query: 576 VDNMVLRRHTNPDSASGSGKPLPPVHFYALESDQPVLDILKPSIIIVYHPDMAFVREIEV 635
           V+N+VLRRHTNP++A+ +GKPLPPV+FYA                             E+
Sbjct: 68  VENIVLRRHTNPNAATRNGKPLPPVYFYA----------------------------PEI 99

Query: 636 YKAENPSKRLKVYFIFYEDSTEVQKFEASIRRENGAFESLIRQK 679
           YK ENPS+RLKVYFIFYEDSTEVQKFEASIRRENGAFESLIRQK
Sbjct: 100 YKVENPSRRLKVYFIFYEDSTEVQKFEASIRRENGAFESLIRQK 143


>Glyma17g33240.1 
          Length = 71

 Score =  105 bits (262), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/87 (66%), Positives = 61/87 (70%), Gaps = 17/87 (19%)

Query: 90  SLYTSGNAFFITARILIVDLLTNRLPTSKIAGIVLLNAHSISETSTEAFIVRIFRSLNRD 149
           SLYT  NAFFI   ILIVDLLTN+LPTSKIAGIV+LNA S+SETSTEAFIVRIFR LN  
Sbjct: 1   SLYTCSNAFFIMPWILIVDLLTNKLPTSKIAGIVILNACSLSETSTEAFIVRIFRLLNHG 60

Query: 150 AYVRAFSDKPHAMVSGFAKAERTMKCL 176
           AY                 AERTMKCL
Sbjct: 61  AY-----------------AERTMKCL 70