Miyakogusa Predicted Gene

Lj2g3v1768680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1768680.1 tr|Q18KT7|Q18KT7_HALWD Transcription initiation
factor IIB OS=Haloquadratum walsbyi (strain DSM
1679,33.62,0.0000000004,TRANSCRIPTION INITIATION FACTOR IIB,NULL;
TRANSCRIPTION INITIATION FACTOR IIB-RELATED,Transcription
,gene.g42231.t1.1
         (219 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g38090.1                                                       381   e-106
Glyma11g07140.1                                                       379   e-105
Glyma17g19490.1                                                        89   4e-18

>Glyma01g38090.1 
          Length = 503

 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/224 (84%), Positives = 200/224 (89%), Gaps = 12/224 (5%)

Query: 1   MEERQSHPHHVFHLRAQDNPLCLATSDLPLPTLHHQNDAGDEEDPFEPTGFLTAFSTWSL 60
           +EERQSHPHHVFH+RAQDNPLCL TSDL LP L+  N+   EEDPFEPTGF+TAFSTW+L
Sbjct: 32  VEERQSHPHHVFHVRAQDNPLCLVTSDLALPALNQNNE---EEDPFEPTGFITAFSTWAL 88

Query: 61  EPSPLYLQSSIAFSGHLAELERTLEXXXXXXA---------TVVVDNLRAYMQIIDVASI 111
           EPSPLYLQSS++FSG+LAELERTLE      +         TVVVDNLRAYMQIIDVASI
Sbjct: 89  EPSPLYLQSSLSFSGYLAELERTLESSSSSSSSSSSSSLSSTVVVDNLRAYMQIIDVASI 148

Query: 112 LGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEPRTLQEISIAANVP 171
           LGLDCDISDHAFQLFRDCCSATCLRNRSVE+LATAALV AIREAQEPRTLQEISIAANVP
Sbjct: 149 LGLDCDISDHAFQLFRDCCSATCLRNRSVESLATAALVQAIREAQEPRTLQEISIAANVP 208

Query: 172 QKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQ 215
           QKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQ
Sbjct: 209 QKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQ 252


>Glyma11g07140.1 
          Length = 466

 Score =  379 bits (972), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/225 (84%), Positives = 200/225 (88%), Gaps = 13/225 (5%)

Query: 1   MEERQSHPHHVFHLRAQDNPLCLATSDLPLPTLHHQNDAGDEEDPFEPTGFLTAFSTWSL 60
           +EERQSHPHHVFH+RAQDNPLCL TSDL LP L+  ND   EEDPFEPTGF+TAFSTW+L
Sbjct: 32  VEERQSHPHHVFHVRAQDNPLCLVTSDLALPALNQNND---EEDPFEPTGFITAFSTWAL 88

Query: 61  EPSPLYLQSSIAFSGHLAELERTLEXXXXXXAT----------VVVDNLRAYMQIIDVAS 110
           EP+PLYLQSS++FSG+LAELERTLE      ++          VVVDNLRAYMQIIDVAS
Sbjct: 89  EPNPLYLQSSLSFSGYLAELERTLESSSSSSSSFTSSSSSSSTVVVDNLRAYMQIIDVAS 148

Query: 111 ILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEPRTLQEISIAANV 170
           ILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALV AIREAQEPRTLQEISIAANV
Sbjct: 149 ILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANV 208

Query: 171 PQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQ 215
           PQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQ
Sbjct: 209 PQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQ 253


>Glyma17g19490.1 
          Length = 90

 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/48 (85%), Positives = 45/48 (93%)

Query: 170 VPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQVT 217
           +PQK+IGKYIKILGEALQLSQPIN+NSISVHMPRFC LLQLNKS Q +
Sbjct: 14  LPQKQIGKYIKILGEALQLSQPINNNSISVHMPRFCMLLQLNKSTQAS 61