Miyakogusa Predicted Gene

Lj2g3v1758490.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1758490.1 Non Chatacterized Hit- tr|I1J8V2|I1J8V2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.18802 PE,90.83,0,domain
present in cyclins, TFIIB and Retinob,Cyclin-like; TRANSCRIPTION
INITIATION FACTOR IIB,NULL; ,CUFF.37990.1
         (346 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g38090.1                                                       635   0.0  
Glyma11g07140.1                                                       629   e-180
Glyma03g29070.1                                                        98   1e-20
Glyma10g15700.1                                                        96   4e-20
Glyma02g32370.1                                                        96   5e-20
Glyma19g31830.1                                                        96   8e-20
Glyma17g19490.1                                                        91   2e-18

>Glyma01g38090.1 
          Length = 503

 Score =  635 bits (1637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/349 (89%), Positives = 322/349 (92%), Gaps = 12/349 (3%)

Query: 6   MKCPYCSAAAGRCATTSSGRSITECTSCGRVMEERQSHPHHVFHLRAQDNPLCLATSDLP 65
           MKCPYCSAA GRCATTSSGRSITECTSCGRV+EERQSHPHHVFH+RAQDNPLCL TSDL 
Sbjct: 1   MKCPYCSAAQGRCATTSSGRSITECTSCGRVVEERQSHPHHVFHVRAQDNPLCLVTSDLA 60

Query: 66  LPTLHHQNDAGDEEDPFEPTGFLTAFSTWSLEPSPLYLQSSIAFSGHLAELERTLEXXXX 125
           LP L+  N+   EEDPFEPTGF+TAFSTW+LEPSPLYLQSS++FSG+LAELERTLE    
Sbjct: 61  LPALNQNNE---EEDPFEPTGFITAFSTWALEPSPLYLQSSLSFSGYLAELERTLESSSS 117

Query: 126 XXA---------TVVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSV 176
             +         TVVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSV
Sbjct: 118 SSSSSSSSSLSSTVVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSV 177

Query: 177 EALATAALVHAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVH 236
           E+LATAALV AIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVH
Sbjct: 178 ESLATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVH 237

Query: 237 MPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 296
           MPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI
Sbjct: 238 MPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 297

Query: 297 CKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEWAFPTTVIASVR 345
           CKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPE AFPTTVIAS R
Sbjct: 298 CKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGR 346


>Glyma11g07140.1 
          Length = 466

 Score =  629 bits (1622), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 310/350 (88%), Positives = 321/350 (91%), Gaps = 13/350 (3%)

Query: 6   MKCPYCSAAAGRCATTSSGRSITECTSCGRVMEERQSHPHHVFHLRAQDNPLCLATSDLP 65
           MKCPYCSAA GRCATTS GRSITECTSCGRV+EERQSHPHHVFH+RAQDNPLCL TSDL 
Sbjct: 1   MKCPYCSAAQGRCATTSGGRSITECTSCGRVVEERQSHPHHVFHVRAQDNPLCLVTSDLA 60

Query: 66  LPTLHHQNDAGDEEDPFEPTGFLTAFSTWSLEPSPLYLQSSIAFSGHLAELERTLEXXXX 125
           LP L+  ND   EEDPFEPTGF+TAFSTW+LEP+PLYLQSS++FSG+LAELERTLE    
Sbjct: 61  LPALNQNND---EEDPFEPTGFITAFSTWALEPNPLYLQSSLSFSGYLAELERTLESSSS 117

Query: 126 XXAT----------VVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRS 175
             ++          VVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRS
Sbjct: 118 SSSSFTSSSSSSSTVVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRS 177

Query: 176 VEALATAALVHAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISV 235
           VEALATAALV AIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISV
Sbjct: 178 VEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISV 237

Query: 236 HMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAE 295
           HMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAE
Sbjct: 238 HMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAE 297

Query: 296 ICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEWAFPTTVIASVR 345
           ICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPE AFPTTVIAS R
Sbjct: 298 ICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGR 347


>Glyma03g29070.1 
          Length = 306

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 7/195 (3%)

Query: 137 AYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEPRT 196
           A+  I  ++  LGL   I D A ++++        R R+ +AL  A L  A R+  +PRT
Sbjct: 102 AFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 161

Query: 197 LQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSISVH----MPRFCTLLQLNKSAQ 251
           ++EI S+A    +KEIG+  + + + L L Q  +    ++H    M RFC+ L +   A 
Sbjct: 162 VKEICSVANGATKKEIGRAKEYIVKQLGLEQGQSVEIGTIHAGDFMRRFCSNLGMTNQAV 221

Query: 252 ELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 311
           + A     V  ++ F  RR+PISI+AA IY+  QL D +K   +I   TG+ E T+R  Y
Sbjct: 222 KAAQEA--VQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPPKDISVATGVAEGTIRNSY 279

Query: 312 KELLENWDDLLPSNY 326
           K+L  +   ++PS Y
Sbjct: 280 KDLYPHVSKIIPSWY 294


>Glyma10g15700.1 
          Length = 313

 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 109/200 (54%), Gaps = 13/200 (6%)

Query: 135 LRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEP 194
           ++A+  I  ++  LGL   I D A ++++        R R+ +AL  A L  A R+  +P
Sbjct: 107 IQAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKP 166

Query: 195 RTLQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSI---SVH----MPRFCTLLQL 246
           RT++EI S+A    +KEIG+  + + + L L    N N++   ++H    M RFC+ L +
Sbjct: 167 RTVKEICSVANGATKKEIGRAKEYIVKQLGLE---NGNAVEMGTIHAGDFMRRFCSNLCM 223

Query: 247 NKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVT 306
           N  A + A     V  ++ F  RR+PISI+AA IY+  QL D +K   +I   TG+ E T
Sbjct: 224 NNQAVKAAQEA--VQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGT 281

Query: 307 LRKVYKELLENWDDLLPSNY 326
           +R  YK+L  +   ++P+ Y
Sbjct: 282 IRNSYKDLYPHVSKIIPNWY 301


>Glyma02g32370.1 
          Length = 314

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 109/202 (53%), Gaps = 21/202 (10%)

Query: 137 AYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEPRT 196
           A+  I  ++  LGL   I D A ++++        R R+ +AL  A L  A R+  +PRT
Sbjct: 110 AFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 169

Query: 197 LQEI-SIAANVPQKEIGKYIKILGEALQLSQPINSNSI---SVH----MPRFCTLLQLN- 247
           ++EI S+A    +KEIG+  + + + L L    N N++   ++H    M RFC+ L +N 
Sbjct: 170 VKEICSVANGATKKEIGRAKEYIVKQLGLE---NGNAVEMGTIHAGDFMRRFCSNLCMNN 226

Query: 248 ---KSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTE 304
              K+AQE A H  E      F  RR+PISI+AA IY+  QL D +K   +I   TG+ E
Sbjct: 227 QAVKAAQE-AVHKSEE-----FDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAE 280

Query: 305 VTLRKVYKELLENWDDLLPSNY 326
            T+R  YK+L  +   ++P+ Y
Sbjct: 281 GTIRNSYKDLYPHVSKIIPNWY 302


>Glyma19g31830.1 
          Length = 282

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 99/184 (53%), Gaps = 7/184 (3%)

Query: 148 LGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEPRTLQEI-SIAANV 206
           LGL   I D A ++++        R R+ +AL  A L  A R+  +PRT++EI S+A   
Sbjct: 89  LGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 148

Query: 207 PQKEIGKYIKILGEALQLSQPINSNSISVH----MPRFCTLLQLNKSAQELATHIGEVVI 262
            +KEIG+  + + + L L Q  +    ++H    M RFC+ L +   A + A     V  
Sbjct: 149 TKKEIGRAKEYIVKQLGLEQGQSVEMGTIHAGDFMRRFCSNLGMTNQAVKAAQEA--VQK 206

Query: 263 NKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLL 322
           ++ F  RR+PISI+AA IY+  QL D +K   +I   TG+ E T+R  YK+L  +   ++
Sbjct: 207 SEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKII 266

Query: 323 PSNY 326
           PS Y
Sbjct: 267 PSWY 270


>Glyma17g19490.1 
          Length = 90

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/62 (70%), Positives = 52/62 (83%), Gaps = 5/62 (8%)

Query: 206 VPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQ-----ELATHIGEV 260
           +PQK+IGKYIKILGEALQLSQPIN+NSISVHMPRFC LLQLNKS Q     +L T + E+
Sbjct: 14  LPQKQIGKYIKILGEALQLSQPINNNSISVHMPRFCMLLQLNKSTQASKSGKLHTKVIEI 73

Query: 261 VI 262
           ++
Sbjct: 74  LL 75