Miyakogusa Predicted Gene

Lj2g3v1758390.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1758390.1 tr|A8HSJ0|A8HSJ0_CHLRE DNA-directed RNA
polymerases I/II/III subunit OS=Chlamydomonas reinhardtii
GN,52.7,5e-17,RNA_POL_N_8KD,RNA polymerases, subunit N, zinc binding
site; RNA_pol_N,DNA-directed RNA polymerase, ,CUFF.37806.1
         (99 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g10100.4                                                        85   2e-17
Glyma06g10100.3                                                        85   2e-17
Glyma06g10100.1                                                        85   2e-17
Glyma02g04080.1                                                        84   3e-17
Glyma01g03590.1                                                        84   3e-17
Glyma04g10140.3                                                        84   4e-17
Glyma04g10140.2                                                        84   4e-17
Glyma04g10140.1                                                        84   4e-17
Glyma06g10100.2                                                        83   6e-17

>Glyma06g10100.4 
          Length = 71

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 49/70 (70%)

Query: 1  MIPVRCFTCGKVVGNKWEPYQQSLKNGCSVNEALDSLGLARSCCRGMLMTHIDLTDDQMD 60
          +IPVRCFTCGKV+GNKW+ Y   L+   S  +ALD+LGL R CCR MLMTH+DL +  ++
Sbjct: 2  IIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61

Query: 61 YDPKPKERHN 70
          Y+   K   N
Sbjct: 62 YNTLDKSDLN 71


>Glyma06g10100.3 
          Length = 71

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 49/70 (70%)

Query: 1  MIPVRCFTCGKVVGNKWEPYQQSLKNGCSVNEALDSLGLARSCCRGMLMTHIDLTDDQMD 60
          +IPVRCFTCGKV+GNKW+ Y   L+   S  +ALD+LGL R CCR MLMTH+DL +  ++
Sbjct: 2  IIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61

Query: 61 YDPKPKERHN 70
          Y+   K   N
Sbjct: 62 YNTLDKSDLN 71


>Glyma06g10100.1 
          Length = 71

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 49/70 (70%)

Query: 1  MIPVRCFTCGKVVGNKWEPYQQSLKNGCSVNEALDSLGLARSCCRGMLMTHIDLTDDQMD 60
          +IPVRCFTCGKV+GNKW+ Y   L+   S  +ALD+LGL R CCR MLMTH+DL +  ++
Sbjct: 2  IIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61

Query: 61 YDPKPKERHN 70
          Y+   K   N
Sbjct: 62 YNTLDKSDLN 71


>Glyma02g04080.1 
          Length = 71

 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 49/67 (73%)

Query: 1  MIPVRCFTCGKVVGNKWEPYQQSLKNGCSVNEALDSLGLARSCCRGMLMTHIDLTDDQMD 60
          +IPVRCFTCGKV+GNKW+ Y   L++  S  +ALD+LGL R CCR MLMTH+DL +  ++
Sbjct: 2  IIPVRCFTCGKVIGNKWDTYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61

Query: 61 YDPKPKE 67
          Y+   K 
Sbjct: 62 YNTLDKS 68


>Glyma01g03590.1 
          Length = 71

 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 49/67 (73%)

Query: 1  MIPVRCFTCGKVVGNKWEPYQQSLKNGCSVNEALDSLGLARSCCRGMLMTHIDLTDDQMD 60
          +IPVRCFTCGKV+GNKW+ Y   L++  S  +ALD+LGL R CCR MLMTH+DL +  ++
Sbjct: 2  IIPVRCFTCGKVIGNKWDTYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61

Query: 61 YDPKPKE 67
          Y+   K 
Sbjct: 62 YNTLDKS 68


>Glyma04g10140.3 
          Length = 71

 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 49/70 (70%)

Query: 1  MIPVRCFTCGKVVGNKWEPYQQSLKNGCSVNEALDSLGLARSCCRGMLMTHIDLTDDQMD 60
          +IPVRCFTCGKV+GNKW+ Y   L+   S  +ALD+LGL R CCR MLMTH+DL +  ++
Sbjct: 2  IIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61

Query: 61 YDPKPKERHN 70
          Y+   K   N
Sbjct: 62 YNTLDKSDPN 71


>Glyma04g10140.2 
          Length = 71

 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 49/70 (70%)

Query: 1  MIPVRCFTCGKVVGNKWEPYQQSLKNGCSVNEALDSLGLARSCCRGMLMTHIDLTDDQMD 60
          +IPVRCFTCGKV+GNKW+ Y   L+   S  +ALD+LGL R CCR MLMTH+DL +  ++
Sbjct: 2  IIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61

Query: 61 YDPKPKERHN 70
          Y+   K   N
Sbjct: 62 YNTLDKSDPN 71


>Glyma04g10140.1 
          Length = 71

 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 49/70 (70%)

Query: 1  MIPVRCFTCGKVVGNKWEPYQQSLKNGCSVNEALDSLGLARSCCRGMLMTHIDLTDDQMD 60
          +IPVRCFTCGKV+GNKW+ Y   L+   S  +ALD+LGL R CCR MLMTH+DL +  ++
Sbjct: 2  IIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61

Query: 61 YDPKPKERHN 70
          Y+   K   N
Sbjct: 62 YNTLDKSDPN 71


>Glyma06g10100.2 
          Length = 69

 Score = 83.2 bits (204), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 47/63 (74%)

Query: 1  MIPVRCFTCGKVVGNKWEPYQQSLKNGCSVNEALDSLGLARSCCRGMLMTHIDLTDDQMD 60
          +IPVRCFTCGKV+GNKW+ Y   L+   S  +ALD+LGL R CCR MLMTH+DL +  ++
Sbjct: 2  IIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61

Query: 61 YDP 63
          Y+ 
Sbjct: 62 YNS 64