Miyakogusa Predicted Gene

Lj2g3v1705470.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1705470.1 tr|Q9M4U6|Q9M4U6_SOLCI Histone H1 variant
OS=Solanum chilense PE=3 SV=1,53.57,9e-19,H15,Histone H1/H5;
Linker_histone,Histone H1/H5; no description,Winged helix-turn-helix
transcriptio,CUFF.37695.1
         (140 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g08000.1                                                        92   2e-19
Glyma02g01860.1                                                        54   4e-08
Glyma10g01940.1                                                        52   2e-07
Glyma10g30560.1                                                        52   2e-07
Glyma10g03840.1                                                        48   3e-06
Glyma20g36880.2                                                        48   3e-06
Glyma20g36880.1                                                        48   3e-06
Glyma02g15910.1                                                        47   6e-06
Glyma02g15910.2                                                        47   7e-06

>Glyma11g08000.1 
          Length = 192

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/127 (45%), Positives = 67/127 (52%), Gaps = 14/127 (11%)

Query: 5   YAIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKLSGXXXXXXXXXXXXX 64
           YAIAKYMEEKHK+VLPANFKKILGLQLKNQAA+GKLVKIKASYKL+              
Sbjct: 69  YAIAKYMEEKHKAVLPANFKKILGLQLKNQAARGKLVKIKASYKLAEAAKKVKESTAKAT 128

Query: 65  XXXXXXXXXXXXXPRQKXXXXXXXXXXXXPKSKKSEAXXXXXXXXXXXXXXSTLAKPKQP 124
                         ++             PK  ++                ST AKPKQP
Sbjct: 129 --------------KESRPKRNKIATAVAPKKTEAVKKPAKKVGPKKTKKVSTPAKPKQP 174

Query: 125 KSIRSPS 131
           +SIRSP+
Sbjct: 175 RSIRSPT 181


>Glyma02g01860.1 
          Length = 190

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 33/45 (73%)

Query: 6  AIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKLS 50
          AIAK++E+KH  VLP NF+K+L +QLK      KL K+K SYKLS
Sbjct: 40 AIAKFIEDKHSKVLPPNFRKLLSVQLKKLVKSEKLYKVKNSYKLS 84


>Glyma10g01940.1 
          Length = 157

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 32/46 (69%)

Query: 6  AIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKLSG 51
          AIAK++E+KH  VLP NF+K+L +QLK      KL K+K  YKLS 
Sbjct: 38 AIAKFIEDKHTKVLPPNFRKLLSVQLKKLVKSEKLYKVKNFYKLSS 83


>Glyma10g30560.1 
          Length = 190

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 35/47 (74%), Gaps = 1/47 (2%)

Query: 4  EYAIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKLS 50
          +YAI KY+E KHK  LPA +KK++ + LK   A GKLVK+K S+KL+
Sbjct: 43 QYAITKYIEGKHKE-LPATYKKLVLVHLKKSVAAGKLVKVKNSFKLA 88


>Glyma10g03840.1 
          Length = 297

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 35/46 (76%), Gaps = 1/46 (2%)

Query: 4   EYAIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKL 49
           +YAIAK++EEKHK  LP NFKK+L   LK   A GKLVK+K S+KL
Sbjct: 77  QYAIAKFIEEKHKQ-LPPNFKKLLLYHLKKLVAAGKLVKVKGSFKL 121


>Glyma20g36880.2 
          Length = 189

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 4  EYAIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKLS 50
          +YAI K++E KHK  LP  +KK++ + LK   A GKLVK+K S+KL+
Sbjct: 42 QYAITKFIEGKHKE-LPPTYKKLVLVHLKKSVAAGKLVKVKNSFKLA 87


>Glyma20g36880.1 
          Length = 190

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 4  EYAIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKLS 50
          +YAI K++E KHK  LP  +KK++ + LK   A GKLVK+K S+KL+
Sbjct: 43 QYAITKFIEGKHKE-LPPTYKKLVLVHLKKSVAAGKLVKVKNSFKLA 88


>Glyma02g15910.1 
          Length = 302

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 35/46 (76%), Gaps = 1/46 (2%)

Query: 4   EYAIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKL 49
           ++AIAK++EEKHK  LP NF+K+L   LK   A GKLVK+K S+KL
Sbjct: 77  QHAIAKFIEEKHKQ-LPPNFRKLLLYHLKKLVAAGKLVKVKGSFKL 121


>Glyma02g15910.2 
          Length = 263

 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 35/46 (76%), Gaps = 1/46 (2%)

Query: 4   EYAIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKL 49
           ++AIAK++EEKHK  LP NF+K+L   LK   A GKLVK+K S+KL
Sbjct: 77  QHAIAKFIEEKHKQ-LPPNFRKLLLYHLKKLVAAGKLVKVKGSFKL 121