Miyakogusa Predicted Gene
- Lj2g3v1695250.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1695250.2 tr|B9IB18|B9IB18_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_247318
PE=4,49.54,4e-19,FAR1,FAR1 DNA binding domain,CUFF.37673.2
(124 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma15g03440.1 234 1e-62
Glyma15g03440.2 233 2e-62
Glyma15g03440.3 233 2e-62
Glyma11g13610.2 217 2e-57
Glyma11g13610.1 216 6e-57
Glyma12g05600.1 214 1e-56
Glyma13g41950.1 101 2e-22
Glyma04g12260.2 96 8e-21
Glyma04g12260.1 96 8e-21
Glyma06g48170.2 94 5e-20
Glyma06g48170.1 94 5e-20
Glyma13g41920.2 75 1e-14
Glyma13g41920.1 75 1e-14
Glyma15g03470.1 74 3e-14
Glyma03g22670.1 70 7e-13
Glyma11g09400.1 59 1e-09
Glyma08g45680.1 51 2e-07
Glyma01g00320.2 51 3e-07
Glyma14g00240.1 51 3e-07
Glyma01g00320.1 51 3e-07
Glyma18g24510.1 51 4e-07
>Glyma15g03440.1
Length = 282
Score = 234 bits (597), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 108/122 (88%), Positives = 118/122 (96%)
Query: 1 MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQY 60
MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWV+TKF+ EHTHPL+PGKGRRDC+YEQY
Sbjct: 159 MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVITKFIMEHTHPLTPGKGRRDCIYEQY 218
Query: 61 PNEHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDMETKE 120
PNEHDKIRELSQQLAIE+KRSATYKRHLELIF+ I+EHN+SLSKKIQHIVD VK+METKE
Sbjct: 219 PNEHDKIRELSQQLAIERKRSATYKRHLELIFEQIEEHNDSLSKKIQHIVDSVKEMETKE 278
Query: 121 EQ 122
+
Sbjct: 279 QN 280
>Glyma15g03440.2
Length = 252
Score = 233 bits (595), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 108/122 (88%), Positives = 118/122 (96%)
Query: 1 MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQY 60
MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWV+TKF+ EHTHPL+PGKGRRDC+YEQY
Sbjct: 129 MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVITKFIMEHTHPLTPGKGRRDCIYEQY 188
Query: 61 PNEHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDMETKE 120
PNEHDKIRELSQQLAIE+KRSATYKRHLELIF+ I+EHN+SLSKKIQHIVD VK+METKE
Sbjct: 189 PNEHDKIRELSQQLAIERKRSATYKRHLELIFEQIEEHNDSLSKKIQHIVDSVKEMETKE 248
Query: 121 EQ 122
+
Sbjct: 249 QN 250
>Glyma15g03440.3
Length = 253
Score = 233 bits (595), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 108/122 (88%), Positives = 118/122 (96%)
Query: 1 MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQY 60
MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWV+TKF+ EHTHPL+PGKGRRDC+YEQY
Sbjct: 130 MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVITKFIMEHTHPLTPGKGRRDCIYEQY 189
Query: 61 PNEHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDMETKE 120
PNEHDKIRELSQQLAIE+KRSATYKRHLELIF+ I+EHN+SLSKKIQHIVD VK+METKE
Sbjct: 190 PNEHDKIRELSQQLAIERKRSATYKRHLELIFEQIEEHNDSLSKKIQHIVDSVKEMETKE 249
Query: 121 EQ 122
+
Sbjct: 250 QN 251
>Glyma11g13610.2
Length = 263
Score = 217 bits (553), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/123 (83%), Positives = 111/123 (90%)
Query: 1 MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQY 60
M DKREKIVRQRAETRVGCRAMI+VRK+SSGKWVV KFVKEHTHPL+PGKGRRD YEQY
Sbjct: 128 MADKREKIVRQRAETRVGCRAMIMVRKLSSGKWVVAKFVKEHTHPLTPGKGRRDFYYEQY 187
Query: 61 PNEHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDMETKE 120
P E DKIRELSQQLA EKKRSA YKRHLELIF+ I+E N++LSKKIQHIVDCVK+ME KE
Sbjct: 188 PTEQDKIRELSQQLATEKKRSAAYKRHLELIFEQIEEQNDNLSKKIQHIVDCVKEMEAKE 247
Query: 121 EQS 123
E S
Sbjct: 248 EHS 250
>Glyma11g13610.1
Length = 295
Score = 216 bits (549), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 103/123 (83%), Positives = 111/123 (90%)
Query: 1 MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQY 60
M DKREKIVRQRAETRVGCRAMI+VRK+SSGKWVV KFVKEHTHPL+PGKGRRD YEQY
Sbjct: 160 MADKREKIVRQRAETRVGCRAMIMVRKLSSGKWVVAKFVKEHTHPLTPGKGRRDFYYEQY 219
Query: 61 PNEHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDMETKE 120
P E DKIRELSQQLA EKKRSA YKRHLELIF+ I+E N++LSKKIQHIVDCVK+ME KE
Sbjct: 220 PTEQDKIRELSQQLATEKKRSAAYKRHLELIFEQIEEQNDNLSKKIQHIVDCVKEMEAKE 279
Query: 121 EQS 123
E S
Sbjct: 280 EHS 282
>Glyma12g05600.1
Length = 263
Score = 214 bits (546), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 102/123 (82%), Positives = 110/123 (89%)
Query: 1 MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQY 60
M DKREKIVRQRAETRVGCRAMI+VRK+SSGKWV+ KFVKEHTHPL+PGKGRRD YEQY
Sbjct: 128 MADKREKIVRQRAETRVGCRAMIMVRKLSSGKWVIAKFVKEHTHPLTPGKGRRDFYYEQY 187
Query: 61 PNEHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDMETKE 120
P E DKIRELSQQLA EKKRSA YKRHLELIF+ I+E NE+LSKKIQHIVD VK+ME KE
Sbjct: 188 PTEQDKIRELSQQLATEKKRSAAYKRHLELIFEQIEEQNENLSKKIQHIVDSVKEMEAKE 247
Query: 121 EQS 123
E S
Sbjct: 248 EHS 250
>Glyma13g41950.1
Length = 100
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/50 (92%), Positives = 49/50 (98%)
Query: 1 MPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGK 50
MPDKREKIVRQRAETRVGCRAMILVR+VSSGKWVVTKF+ EHTHPL+PGK
Sbjct: 50 MPDKREKIVRQRAETRVGCRAMILVRRVSSGKWVVTKFIMEHTHPLTPGK 99
>Glyma04g12260.2
Length = 176
Score = 95.9 bits (237), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 75/116 (64%), Gaps = 9/116 (7%)
Query: 12 RAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPL--SPGKGRRDCVYEQYPNEHD-KIR 68
RA TR GC+AMI ++ SGKWV+TKFVK+H HPL SP + R Q +E D KI+
Sbjct: 65 RASTREGCKAMIHIKYDKSGKWVITKFVKDHNHPLVVSPREAR------QTMDEKDKKIQ 118
Query: 69 ELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDMETKEEQSH 124
EL+ +L ++K+ ATY+ L ++EHNE LS KI H+V+ +K+ E+ EE H
Sbjct: 119 ELTAELRLKKRLCATYQEQLTSFMKIVEEHNEKLSAKIHHVVNNLKEFESIEELLH 174
>Glyma04g12260.1
Length = 176
Score = 95.9 bits (237), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 75/116 (64%), Gaps = 9/116 (7%)
Query: 12 RAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPL--SPGKGRRDCVYEQYPNEHD-KIR 68
RA TR GC+AMI ++ SGKWV+TKFVK+H HPL SP + R Q +E D KI+
Sbjct: 65 RASTREGCKAMIHIKYDKSGKWVITKFVKDHNHPLVVSPREAR------QTMDEKDKKIQ 118
Query: 69 ELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDMETKEEQSH 124
EL+ +L ++K+ ATY+ L ++EHNE LS KI H+V+ +K+ E+ EE H
Sbjct: 119 ELTAELRLKKRLCATYQEQLTSFMKIVEEHNEKLSAKIHHVVNNLKEFESIEELLH 174
>Glyma06g48170.2
Length = 241
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 77/124 (62%), Gaps = 9/124 (7%)
Query: 4 KREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPL--SPGKGRRDCVYEQYP 61
K + + RA TR GC+AMI ++ SGKWV+TKFVK+H HPL SP + R Q
Sbjct: 122 KFSSVRKPRASTREGCKAMIHIKYNKSGKWVITKFVKDHNHPLVVSPREAR------QTM 175
Query: 62 NEHD-KIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDMETKE 120
+E D KI+EL+ +L +K+ ATY+ L ++EHNE LS KI H+V+ +K+ E+ E
Sbjct: 176 DEKDKKIQELTAELRHKKRLCATYQEQLTSFMKIVEEHNEKLSAKIHHVVNNLKEFESIE 235
Query: 121 EQSH 124
E H
Sbjct: 236 ELLH 239
>Glyma06g48170.1
Length = 241
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 77/124 (62%), Gaps = 9/124 (7%)
Query: 4 KREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPL--SPGKGRRDCVYEQYP 61
K + + RA TR GC+AMI ++ SGKWV+TKFVK+H HPL SP + R Q
Sbjct: 122 KFSSVRKPRASTREGCKAMIHIKYNKSGKWVITKFVKDHNHPLVVSPREAR------QTM 175
Query: 62 NEHD-KIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDMETKE 120
+E D KI+EL+ +L +K+ ATY+ L ++EHNE LS KI H+V+ +K+ E+ E
Sbjct: 176 DEKDKKIQELTAELRHKKRLCATYQEQLTSFMKIVEEHNEKLSAKIHHVVNNLKEFESIE 235
Query: 121 EQSH 124
E H
Sbjct: 236 ELLH 239
>Glyma13g41920.2
Length = 256
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 8/122 (6%)
Query: 4 KREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPL-SPGK--GRRDCVYEQY 60
+R++++ TR GC+AMI + GKWVVTKFVKEHTH L SP K R +
Sbjct: 126 RRDRVLPPPPATREGCQAMIRLALRDGGKWVVTKFVKEHTHKLMSPSKVPWRGSGKHLVS 185
Query: 61 PNEHDK-IRELSQQLAIE----KKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKD 115
+E DK IRELS +L E K+R A Y+ L +I + +++H E +S+K+ +V +++
Sbjct: 186 EDEKDKRIRELSLELYNERQKCKRRCAAYEEQLNMILNDLEKHTEHISEKVAAVVRSIRE 245
Query: 116 ME 117
+E
Sbjct: 246 IE 247
>Glyma13g41920.1
Length = 256
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 8/122 (6%)
Query: 4 KREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPL-SPGK--GRRDCVYEQY 60
+R++++ TR GC+AMI + GKWVVTKFVKEHTH L SP K R +
Sbjct: 126 RRDRVLPPPPATREGCQAMIRLALRDGGKWVVTKFVKEHTHKLMSPSKVPWRGSGKHLVS 185
Query: 61 PNEHDK-IRELSQQLAIE----KKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKD 115
+E DK IRELS +L E K+R A Y+ L +I + +++H E +S+K+ +V +++
Sbjct: 186 EDEKDKRIRELSLELYNERQKCKRRCAAYEEQLNMILNDLEKHTEHISEKVAAVVRSIRE 245
Query: 116 ME 117
+E
Sbjct: 246 IE 247
>Glyma15g03470.1
Length = 259
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 77/128 (60%), Gaps = 8/128 (6%)
Query: 4 KREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPL-SPGK--GRRDCVYEQY 60
++++++ TR GC+AMI + GKWVVTKFVKEHTH L SP K R +
Sbjct: 124 RKDRVLPPPPATREGCQAMIRLALRDRGKWVVTKFVKEHTHKLMSPSKVPCRGSGKHLVS 183
Query: 61 PNEHDK-IRELSQQLAIE----KKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKD 115
+E DK IRELS +L E K+R A Y+ L +I + +++H E +SKK+ +V +++
Sbjct: 184 EDEKDKRIRELSLELYNERQKCKRRCAAYEEQLNVILNDLEKHTEHISKKVAAVVRSIRE 243
Query: 116 METKEEQS 123
+E ++ S
Sbjct: 244 IEEEKSDS 251
>Glyma03g22670.1
Length = 175
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 69/116 (59%), Gaps = 3/116 (2%)
Query: 3 DKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQYPN 62
+K + + + RA R GC AM+ V+ + GKWVVTKFVKEH+H L+ + + E +
Sbjct: 56 NKTKPVHKPRASIREGCEAMMYVKVNTCGKWVVTKFVKEHSHLLNASALPYNSLIE---S 112
Query: 63 EHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDCVKDMET 118
+ I++L+++L + + Y+R L + + +DE + LS K++ +V+ VK +E
Sbjct: 113 KDRIIQQLAKELEHQDRLCQHYRRQLFSLLETVDEQTKCLSTKVELVVNTVKKLEN 168
>Glyma11g09400.1
Length = 774
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 33/42 (78%)
Query: 7 KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSP 48
++ R RAETRVGC+AM++V+ SG+WVV+ F+KEH H L P
Sbjct: 118 RVKRPRAETRVGCKAMLVVKIQDSGRWVVSSFLKEHNHELVP 159
>Glyma08g45680.1
Length = 153
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 12 RAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPL 46
R R GC+A ILV+ SGKWVVT+FVK+H HPL
Sbjct: 64 RPSAREGCKATILVKLEKSGKWVVTRFVKDHNHPL 98
>Glyma01g00320.2
Length = 750
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 4 KREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSP 48
K +I R R TRVGC+A + V+ SGKW+V+ FV+EH H L P
Sbjct: 117 KDREIKRPRTITRVGCKASLSVKMQDSGKWIVSGFVREHNHELVP 161
>Glyma14g00240.1
Length = 691
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 4 KREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSP 48
K +I R R TRVGC+A + V+ SGKW+V+ FV+EH H L P
Sbjct: 117 KDREIKRPRTITRVGCKASLSVKMQDSGKWIVSGFVREHNHELVP 161
>Glyma01g00320.1
Length = 787
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 4 KREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSP 48
K +I R R TRVGC+A + V+ SGKW+V+ FV+EH H L P
Sbjct: 117 KDREIKRPRTITRVGCKASLSVKMQDSGKWIVSGFVREHNHELVP 161
>Glyma18g24510.1
Length = 121
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 10 RQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPL 46
+ R R GC+A ILV+ SGKW+VT+FVK+H HPL
Sbjct: 69 KPRPSAREGCKATILVKFEKSGKWIVTRFVKDHNHPL 105