Miyakogusa Predicted Gene

Lj2g3v1601010.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1601010.2 Non Chatacterized Hit- tr|Q8C0U7|Q8C0U7_MOUSE
Putative uncharacterized protein OS=Mus musculus
GN=Ml,30.92,3e-18,MutL_C,MutL, C-terminal, dimerisation; DNA MISMATCH
REPAIR PROTEIN MLH3,NULL; DNA MISMATCH REPAIR PR,CUFF.37557.2
         (681 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g36280.1                                                       552   e-157
Glyma11g09160.1                                                       415   e-115
Glyma02g17420.1                                                        66   1e-10
Glyma10g12930.1                                                        65   2e-10
Glyma10g02390.1                                                        59   1e-08

>Glyma01g36280.1 
          Length = 1006

 Score =  552 bits (1422), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 290/450 (64%), Positives = 328/450 (72%), Gaps = 75/450 (16%)

Query: 236  EQDWLLHESSVRNCNRSSTDKGKREHFRHTSLGKNHERSKRSSSAPPFHRSKRRFICLHQ 295
            E DWLL +S +++C R + +KGKR+ FR+++L +N ERS+RS SAPPFHRSKRRF  L+ 
Sbjct: 621  EPDWLLSKSCIKSCKRPNKNKGKRDRFRNSTLEENLERSRRSFSAPPFHRSKRRFFSLNH 680

Query: 296  APETIAKRSPGRASSPIFNHHEASDPQQSPGALHTSTDDLLLQEFKTNVKQSSEVLGDSK 355
              E IAKR  GR                                   NVKQ++EVLGD +
Sbjct: 681  PSEMIAKRQIGRV---------------------------------INVKQTTEVLGDMQ 707

Query: 356  VNDIAETDGFESFSIQNSDPLRELISGEVQDSVDYRTKWRDCSPQIPKDDKLVDTQSQHN 415
             NDIA+ D FESF+IQ S P             DY TKWR+CSP+I           Q+N
Sbjct: 708  DNDIADIDEFESFNIQKSAPFG-----------DYGTKWRNCSPKI-------TVTFQNN 749

Query: 416  ILDISSGFLHLAGDSLIPETISKKCLDDAKVLHQVDKKFIPIVAGRTLAIIDQHAADERI 475
            ILDISSGFLHLAGDSLIPETISKKCL+DAKVLHQVDKKFIP+VAGRTLA+IDQHAADERI
Sbjct: 750  ILDISSGFLHLAGDSLIPETISKKCLEDAKVLHQVDKKFIPVVAGRTLAVIDQHAADERI 809

Query: 476  RLEELRQKVLSGEAKSITYLDAEQELVLPEIGYQLLHNYSEQIKDWGWICNIHGQHSESF 535
            RLEELRQKVL                  PEIGYQLLH+YSEQIKDWGWICNIH Q+SESF
Sbjct: 810  RLEELRQKVL------------------PEIGYQLLHSYSEQIKDWGWICNIHAQNSESF 851

Query: 536  RRNLDILNRHQMAFTLIAV------PCILGANLNDVDLLEYLQQLADTDGSSTMPPSVIR 589
            RR+LDILNR QMA TLIAV      PCILG  LNDVDLLE+LQQLADTDGSST+PPSV+R
Sbjct: 852  RRSLDILNRPQMAVTLIAVNTFFSVPCILGVKLNDVDLLEFLQQLADTDGSSTIPPSVLR 911

Query: 590  VLNSKACRGAIMFGDSLLPSECSLIVEELRLTSLCFQCAHGRPTTVPLVNLEALHNQIPK 649
            VLN KACRGAIMFGDSLLPSECSLIVEEL+ TSLCFQCAHGRPTTVPLVNLEALHNQI K
Sbjct: 912  VLNLKACRGAIMFGDSLLPSECSLIVEELKHTSLCFQCAHGRPTTVPLVNLEALHNQIAK 971

Query: 650  LGRMNDYSSDKWHGLQRCEISLERAARRLS 679
            L  MN+ SSD+WHGL R ++ +ERAA+RL+
Sbjct: 972  LRLMNERSSDEWHGLHRHKVCIERAAQRLN 1001



 Score = 94.7 bits (234), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/136 (44%), Positives = 68/136 (50%), Gaps = 43/136 (31%)

Query: 10  SMTMFGSGVEIGGDFQKPFLKSCTTRKGSTLHEKALLVNDEHELQTDSFFIKKNLEEDYH 69
           S + +G  V+I GD Q+PFLK C+   GS LHEKAL VNDEHELQTD F+ K N EEDY 
Sbjct: 528 SCSGYGYDVKINGDLQQPFLKRCSML-GSILHEKALFVNDEHELQTDGFWSKHNTEEDYR 586

Query: 70  SGKDMFADPCLEVAKKLKTSKDTDFPFRAWSEENCLPPVSCNSGTQIRSSGSDDQLLNSE 129
                                                     S  +I SSGSDDQLLN E
Sbjct: 587 ------------------------------------------SALRIGSSGSDDQLLNFE 604

Query: 130 WFPVCLDPSSQDTALG 145
           W PV   PSSQ +ALG
Sbjct: 605 WHPVHQIPSSQASALG 620


>Glyma11g09160.1 
          Length = 895

 Score =  415 bits (1066), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 234/395 (59%), Positives = 270/395 (68%), Gaps = 60/395 (15%)

Query: 323 QSPGALHTSTDDLLLQEFKTNVKQSSEVLGDSKVNDIAETDGFESFSIQNSDPLRELISG 382
           +SP  LH ST++ LLQEFK NVK++SEVLGD +VNDI + DGFESF+IQNS P  ELIS 
Sbjct: 518 KSPVGLHHSTEEFLLQEFKINVKRTSEVLGDMQVNDITDIDGFESFNIQNSAPFGELISR 577

Query: 383 EVQDSVDYRTKWRDCSPQIP-----------------------KDDKLVDTQSQHNILDI 419
            VQDS+DY TKWR+CSP+I                        K+DKL + QSQ+NILDI
Sbjct: 578 GVQDSLDYGTKWRNCSPKITVTLSIFSGLLCFHRRHSLVWRMTKNDKLANIQSQNNILDI 637

Query: 420 SSGFLHLAGDSLIPETISKKCLDDAKVLHQVDKKFIPIVAGRTLAIIDQHAADERIRLEE 479
           SSGFLHLAGDSLIPETISKKCL+DAKVLHQVDKKFI +VAGRTLA+IDQHAADERIRLEE
Sbjct: 638 SSGFLHLAGDSLIPETISKKCLEDAKVLHQVDKKFILVVAGRTLAVIDQHAADERIRLEE 697

Query: 480 LRQKVLSGEAKSITYLDAEQELVLPEIGYQLLHNYSEQIKDWGWICNIHGQHSESFRRNL 539
           L QKV                 +L     +L+ NY      +  I       +ES    L
Sbjct: 698 LCQKV--------------NFFILIMYCRRLVINY------FIVIVKRLKTGAESAPFML 737

Query: 540 DILNRHQMAFTLIAVPC---------------ILGANLNDVDLLEYLQQLADTDGSSTMP 584
            ILN   +    + +PC                    LNDVDLLE+LQQ+ADTDGSSTMP
Sbjct: 738 KILN--PLEGIPLWLPCREFGYPQQTTNGRHTYCRVKLNDVDLLEFLQQVADTDGSSTMP 795

Query: 585 PSVIRVLNSKACRGAIMFGDSLLPSECSLIVEELRLTSLCFQCAHGRPTTVPLVNLEALH 644
           PSV+RVLN KACRGAIMFGDSLLPSECS IVEEL+ TSLCFQCAHGRP TVPLVNLEALH
Sbjct: 796 PSVLRVLNLKACRGAIMFGDSLLPSECSFIVEELKHTSLCFQCAHGRPATVPLVNLEALH 855

Query: 645 NQIPKLGRMNDYSSDKWHGLQRCEISLERAARRLS 679
           NQI KL  MN+ SSD+ HGL+R  + +ERAA+RL+
Sbjct: 856 NQIAKLRLMNECSSDECHGLRRHTVRVERAAQRLN 890


>Glyma02g17420.1 
          Length = 938

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 101/227 (44%), Gaps = 48/227 (21%)

Query: 445 KVLHQVDKKFIPIVAGRTLAIIDQHAADERIRLEELRQKVLSGEAKSITYLDAEQELVLP 504
           KV+ Q +  FI     + L I+DQHAADE+   E L Q          T L+ +Q L+ P
Sbjct: 724 KVIGQFNLGFIICKLDQDLFIVDQHAADEKYNFERLSQS---------TILN-QQPLLRP 773

Query: 505 EIGYQLLHNYSEQIKDWGWICNIHGQHSESFRRNLDILNRHQMA-----FTLIAVP---- 555
               +L  +  E+I        +   H +  R+N   L     A     F L +VP    
Sbjct: 774 ---IKLELSPEEEI--------VASMHMDIIRKNGFTLEEDPNAPPGCRFKLKSVPFSKN 822

Query: 556 ---CILGANLNDVDLLEYLQQLADTDG--------------SSTMPPSVIR-VLNSKACR 597
               I G     +D+ E +  L+D DG              S ++ PS +R +L S+ACR
Sbjct: 823 TMFGIEGRKSICIDVKELISILSDGDGHVECSIVGSYKLDTSDSVCPSRVRAMLASRACR 882

Query: 598 GAIMFGDSLLPSECSLIVEELRLTSLCFQCAHGRPTTVPLVNLEALH 644
            +IM GD+L  +E   I+E +      + C HGRPT   LV+L  +H
Sbjct: 883 SSIMVGDALGRNEMQKILEHMAELKSPWNCPHGRPTMRHLVDLTKIH 929


>Glyma10g12930.1 
          Length = 40

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/35 (80%), Positives = 30/35 (85%)

Query: 502 VLPEIGYQLLHNYSEQIKDWGWICNIHGQHSESFR 536
           VL EI YQLL + SEQIKDWGWICNIH Q+SESFR
Sbjct: 5   VLLEIAYQLLRSCSEQIKDWGWICNIHAQNSESFR 39


>Glyma10g02390.1 
          Length = 709

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 98/233 (42%), Gaps = 54/233 (23%)

Query: 445 KVLHQVDKKFIPIVAGRTLAIIDQHAADERIRLEELRQKVLSGEAKSITYLDAEQELVLP 504
           KV+ Q +  FI     + L I+DQHAADE+   E L Q  +             Q+ +L 
Sbjct: 489 KVIGQFNLGFIICKLDQDLFIVDQHAADEKYNFERLSQSTI-----------LNQQPLLR 537

Query: 505 EIGYQLLHNYSEQIKDWGWICNIHGQHSESFRRNLDILNRHQMA-----FTLIAVP---- 555
            I  +L  +  E+I        +   H +  R+N   L     A     F L +VP    
Sbjct: 538 PIKLEL--SPEEEI--------VASMHMDIIRKNGFTLEEDPNAPPGCRFKLKSVPFSKN 587

Query: 556 CILGAN---------LNDVDLLEYLQQLADTDG--------------SSTMPPSVIR-VL 591
            + G             D  + E +  L+D DG              S ++ PS +R +L
Sbjct: 588 TMFGIEGSYWRHPQLTYDTYVKELISILSDGDGHVECSIVGSYKLDTSDSVCPSRVRAML 647

Query: 592 NSKACRGAIMFGDSLLPSECSLIVEELRLTSLCFQCAHGRPTTVPLVNLEALH 644
            S+ACR +IM GD+L  +E   I+E +      + C HGRPT   LV+L  +H
Sbjct: 648 ASRACRSSIMVGDALGRNEMQKILEHMAELKSPWNCPHGRPTMRHLVDLTKIH 700