Miyakogusa Predicted Gene

Lj2g3v1600990.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1600990.1 tr|G7K187|G7K187_MEDTR MutL DNA mismatch repair
protein OS=Medicago truncatula GN=MTR_5g024250 PE=4
,80.08,0,DNA_MISMATCH_REPAIR_1,DNA mismatch repair, conserved site;
DNA MISMATCH REPAIR PROTEIN MLH3,NULL; DN,CUFF.37553.1
         (266 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g09160.1                                                       424   e-119
Glyma01g36280.1                                                       412   e-115
Glyma02g17420.1                                                        97   1e-20
Glyma04g43420.1                                                        97   3e-20

>Glyma11g09160.1 
          Length = 895

 Score =  424 bits (1091), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/286 (76%), Positives = 235/286 (82%), Gaps = 22/286 (7%)

Query: 3   AIIRPLPEAVRSSVRSGIFLFDLTRVVEELVFNSLDARATK-------VSVFVNVGSCYL 55
           A I+ L EAVRSS+RSGIFL D TRVVEELVFNSLDARATK       VSVFV+ GSCYL
Sbjct: 2   ASIKLLSEAVRSSLRSGIFLVDFTRVVEELVFNSLDARATKGETEKLKVSVFVSTGSCYL 61

Query: 56  KVVDDGGGITRDGLELVGERYATSKFLNLADLNAISGNFGFRGEALASISEVSLLEIVTR 115
           KVVDDG GI RDG+E+VGERYATSKFLNL DLNA S NFGFRGE LASISEVSLLEIVT+
Sbjct: 62  KVVDDGSGIPRDGMEMVGERYATSKFLNLVDLNASSENFGFRGEVLASISEVSLLEIVTK 121

Query: 116 TYGRPNGYRKVLKGCKCLYLGLDDDRKEVGTTVVVRELFYNQPVRRKYMQSSPNKVLQLI 175
           TYGRPNGYRKVLKGCKCLYLG+DDDRKE+GTTVV+R+LFYNQPV+RKYMQSSPNKVLQ I
Sbjct: 122 TYGRPNGYRKVLKGCKCLYLGIDDDRKEMGTTVVIRDLFYNQPVQRKYMQSSPNKVLQSI 181

Query: 176 KKSAMRLALVHSSISFNVVDIEREAELFCTHSASSPLSLVTSGFGLEVTSSLHQLDVEND 235
           K   + LALV  +ISF VVDIERE ELFCTHSASSPLSLVTSGFG+EVTSSLH L+VEND
Sbjct: 182 KNCVVWLALVCPNISFKVVDIEREDELFCTHSASSPLSLVTSGFGVEVTSSLHNLEVEND 241

Query: 236 TIKLSGYVSSPCNTLQMK---------------ALQYVCILVTVQL 266
            IKLSGY+S PCNT+  K               ALQYVCI VT  L
Sbjct: 242 IIKLSGYISGPCNTVDTKILSGCPPLTFGAFLQALQYVCIHVTTTL 287


>Glyma01g36280.1 
          Length = 1006

 Score =  412 bits (1058), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/233 (87%), Positives = 212/233 (90%)

Query: 3   AIIRPLPEAVRSSVRSGIFLFDLTRVVEELVFNSLDARATKVSVFVNVGSCYLKVVDDGG 62
           A I+PLPEAVRSS+RSGIFLFD TRVVEELVFNSLDARATKVSVFV+  SCYLKVVDDG 
Sbjct: 2   ASIKPLPEAVRSSLRSGIFLFDFTRVVEELVFNSLDARATKVSVFVSTRSCYLKVVDDGS 61

Query: 63  GITRDGLELVGERYATSKFLNLADLNAISGNFGFRGEALASISEVSLLEIVTRTYGRPNG 122
           GI RD LELVGERYATSKFLNL DLNA S NFGFRGEALASISEVSLLEIVT+TYGRPNG
Sbjct: 62  GIPRDELELVGERYATSKFLNLVDLNATSENFGFRGEALASISEVSLLEIVTKTYGRPNG 121

Query: 123 YRKVLKGCKCLYLGLDDDRKEVGTTVVVRELFYNQPVRRKYMQSSPNKVLQLIKKSAMRL 182
           YRKVLKGCKCLYLG+DDDRKEVGTTVVVR+LFYNQPVRRKYMQSSPNKVLQ IK   MRL
Sbjct: 122 YRKVLKGCKCLYLGIDDDRKEVGTTVVVRDLFYNQPVRRKYMQSSPNKVLQSIKNCIMRL 181

Query: 183 ALVHSSISFNVVDIEREAELFCTHSASSPLSLVTSGFGLEVTSSLHQLDVEND 235
           ALV  +ISF VVDIERE ELFCTHSASSPL LVTSGFG+EV SSLH L+VEND
Sbjct: 182 ALVRPNISFKVVDIEREDELFCTHSASSPLPLVTSGFGVEVASSLHNLEVEND 234


>Glyma02g17420.1 
          Length = 938

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 92/162 (56%), Gaps = 3/162 (1%)

Query: 2   AAIIRPLPEAVRSSVRSGIFLFDLTRVVEELVFNSLDARATKVSV-FVNVGSCYLKVVDD 60
           A II+P+ + +   + +G  + DL+  V+ELV NSLDA AT + +   + G  + +V+D+
Sbjct: 5   AQIIKPIGKGIVHRICAGQVILDLSSAVKELVENSLDAGATSIEISLKDFGEQWFQVIDN 64

Query: 61  GGGITRDGLELVGERYATSKFLNLADLNAISGNFGFRGEALASISEVSLLEIVTRTYGRP 120
           G GI+ +  +++  ++ TSK     DL +++  FGFRGEAL+S+  +  L + TRT   P
Sbjct: 65  GCGISPNNFKVLALKHHTSKLSEFHDLQSLT-TFGFRGEALSSLCALGNLTVETRTASEP 123

Query: 121 NGYRKVLKGCKCLYLGLDDDRKEVGTTVVVRELFYNQPVRRK 162
                       L       R ++GTTV+V++LF N PVR K
Sbjct: 124 VATHLTFDNSGVLVAERKTAR-QIGTTVMVKKLFSNLPVRSK 164


>Glyma04g43420.1 
          Length = 744

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/255 (31%), Positives = 134/255 (52%), Gaps = 25/255 (9%)

Query: 5   IRPLPEAVRSSVRSGIFLFDLTRVVEELVFNSLDARATKVSVFVNVGSCYL-KVVDDGGG 63
           I+ L E+V + + +G  +      V+ELV NSLDA ++ VS+ +  G   L +V DDG G
Sbjct: 15  IQRLSESVVNRIAAGEVIQRPVSAVKELVENSLDAASSSVSLLIKDGGLKLIQVSDDGHG 74

Query: 64  ITRDGLELVGERYATSKFLNLADLNAISGNFGFRGEALASISEVSLLEIVTRTYGRPNGY 123
           I  + L ++ ER+ TSK  +  DL  I    GFRGEALAS++ V+ + + T T  + +GY
Sbjct: 75  IRFEDLPILCERHTTSKLSSFEDLQRIKS-MGFRGEALASMTYVAHVTVTTITKPQLHGY 133

Query: 124 RKVLKGCKCLYLGLDDDRKEV-----GTTVVVRELFYNQPVRRKYMQSSPN---KVLQLI 175
           R   +       G+ + +        GT ++V  LFYN   RRK +Q+S +   K++ L+
Sbjct: 134 RVSYRD------GVMEHQPRPCAAVKGTQIMVENLFYNMAARRKTLQNSSDDYSKIVDLV 187

Query: 176 KKSAMRLALVHSSISFNVVDIEREAELFCTHSASSPLSLVTSGFGLEVTSSLHQLDV-EN 234
                R A+ H ++SF+            T + SS L  + S +G+ V  +L +++  +N
Sbjct: 188 S----RFAIHHINVSFSCRKHGAVRADVHTVAMSSRLDAIKSVYGVSVARNLIEIEASDN 243

Query: 235 D----TIKLSGYVSS 245
           D      ++ GY+S+
Sbjct: 244 DPSTSVFEMHGYMSN 258