Miyakogusa Predicted Gene

Lj2g3v1549640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1549640.1 Non Chatacterized Hit- tr|I3RZV1|I3RZV1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.21,0,seg,NULL;
RNA_POL_K_14KD,DNA-directed RNA polymerase, 14-18kDa subunit,
conserved site; DNA-DIRECTED,CUFF.37392.1
         (127 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g29520.1                                                       157   2e-39
Glyma10g38350.2                                                       155   7e-39
Glyma10g38350.1                                                       151   1e-37
Glyma03g07700.1                                                        58   3e-09

>Glyma20g29520.1 
          Length = 142

 Score =  157 bits (397), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/127 (66%), Positives = 87/127 (68%), Gaps = 2/127 (1%)

Query: 1   MADEDYDDVDMGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQPVQRPRK 60
           MADEDY+D+DMGY                                       QPV+RPRK
Sbjct: 1   MADEDYEDIDMGYEDEPPEPEIEEGAEEDVENKNDEITGEPIDTEDKEE--EQPVKRPRK 58

Query: 61  TSKYMTKYERARILGTRALQISMNAPVMVELAGETDPLEIAMKELRERKIPFTIRRYLPD 120
           TSKYMTKYERARILGTRALQISMNAPVMVEL GETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 59  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 118

Query: 121 GSYEDWG 127
           GSYEDWG
Sbjct: 119 GSYEDWG 125


>Glyma10g38350.2 
          Length = 142

 Score =  155 bits (393), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 83/127 (65%), Positives = 87/127 (68%), Gaps = 2/127 (1%)

Query: 1   MADEDYDDVDMGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQPVQRPRK 60
           MAD+DY+D+DMGY                                       QPV+RPRK
Sbjct: 1   MADDDYEDIDMGYEDEPPEPEIEEGAEEDLENKNDELTGEPIDTEDKEE--EQPVERPRK 58

Query: 61  TSKYMTKYERARILGTRALQISMNAPVMVELAGETDPLEIAMKELRERKIPFTIRRYLPD 120
           TSKYMTKYERARILGTRALQISMNAPVMVEL GETDPLEIAMKELRERKIPFTIRRYLPD
Sbjct: 59  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 118

Query: 121 GSYEDWG 127
           GSYEDWG
Sbjct: 119 GSYEDWG 125


>Glyma10g38350.1 
          Length = 146

 Score =  151 bits (382), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/75 (97%), Positives = 74/75 (98%)

Query: 53  QPVQRPRKTSKYMTKYERARILGTRALQISMNAPVMVELAGETDPLEIAMKELRERKIPF 112
           QPV+RPRKTSKYMTKYERARILGTRALQISMNAPVMVEL GETDPLEIAMKELRERKIPF
Sbjct: 55  QPVERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 114

Query: 113 TIRRYLPDGSYEDWG 127
           TIRRYLPDGSYEDWG
Sbjct: 115 TIRRYLPDGSYEDWG 129


>Glyma03g07700.1 
          Length = 74

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/30 (90%), Positives = 28/30 (93%)

Query: 53 QPVQRPRKTSKYMTKYERARILGTRALQIS 82
          QPV+RPRKTSKYMTKYE ARILGT ALQIS
Sbjct: 27 QPVERPRKTSKYMTKYEHARILGTCALQIS 56