Miyakogusa Predicted Gene
- Lj2g3v1548470.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1548470.1 tr|A9TFZ6|A9TFZ6_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,45.22,2e-18,no description,Nucleic acid-binding, OB-fold;
seg,NULL; Rep-A_N,Replication factor-A protein 1, N-te,CUFF.37375.1
(362 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma09g34670.1 355 4e-98
Glyma04g34970.1 181 1e-45
Glyma09g34660.1 167 2e-41
Glyma15g19090.1 94 2e-19
Glyma09g07850.1 75 8e-14
Glyma05g00370.1 59 1e-08
Glyma05g00370.2 59 1e-08
Glyma17g08660.2 58 2e-08
Glyma17g08660.1 58 2e-08
>Glyma09g34670.1
Length = 786
Score = 355 bits (912), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 194/322 (60%), Positives = 225/322 (69%), Gaps = 38/322 (11%)
Query: 1 MAVNLTEGAIMAMCTDGVTSDQLQPVLQIIDLKHVQTQQNNATKRYRVVVSDGFLYQQGM 60
MAV+LT+ AIM MC+ + LQPVLQ+I+LK VQ+QQN+ +RYR+V+SDG YQQGM
Sbjct: 1 MAVSLTQSAIMEMCSANC-PEGLQPVLQVIELKLVQSQQNSNVERYRLVLSDGSHYQQGM 59
Query: 61 LATQRNELVDSGKLQKGSIVRLTQFACNHVGDRMXXXXXXXXXXMDKCDLIGEPKPAPRN 120
LATQ+N+LV +GKLQKGS+VRLTQF CN V R +DKC+LIGEP PAP++
Sbjct: 60 LATQKNDLVHAGKLQKGSVVRLTQFICNVVQSRKIIIIVDLDVVLDKCELIGEPVPAPKD 119
Query: 121 GARAQSATGQSGVTSGNSQPFNNSANAGGVTARTSPVGPSLDHPKVNPPATNVYSSSSDP 180
A +SATGQSGVTSGN Q N+S++ GG+ AR + PS DHPKVNP A+ VYS
Sbjct: 120 -APTESATGQSGVTSGNPQLLNSSSHTGGMPARPNVASPSPDHPKVNPSASGVYS----- 173
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXRFGASNAPPAYPKVESGASLPRSTTHGGSYGDQNTGF 240
SNAPP YPKVE G S RS GS G QNTGF
Sbjct: 174 ---------------------------SNAPPTYPKVEHGVS--RSAPFSGSSGGQNTGF 204
Query: 241 RNPQQYEASRPVPNSYARTP-QPMYRQPSPMYTNRGPIGRNEAPPRIIPIAALNPYQNMW 299
RNP Q+EASRP+ NSYAR P QPMYRQPSPMYTNR P+GRNEA PRIIPIAALNPYQ+MW
Sbjct: 205 RNP-QFEASRPLQNSYARPPQQPMYRQPSPMYTNRAPMGRNEAAPRIIPIAALNPYQSMW 263
Query: 300 TIKARVTAKGELRAYHNARGEG 321
TIKARVT KGELR Y NARG+G
Sbjct: 264 TIKARVTFKGELRHYTNARGDG 285
>Glyma04g34970.1
Length = 498
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/217 (49%), Positives = 124/217 (57%), Gaps = 60/217 (27%)
Query: 105 MDKCDLIGEPKPAPRNGARAQSATGQSGVTSGNSQPFNNSANAGGVTARTSPVGPSLDHP 164
+DKC+LIGEP PAP++ A +SATGQSGVT GN Q N+S++ GG+ AR + PS DHP
Sbjct: 3 LDKCELIGEPVPAPKD-APTESATGQSGVTYGNPQLLNSSSHTGGMPARPNIASPSPDHP 61
Query: 165 KVNPPATNVYSSSSDPXXXXXXXXXXXXXXXXXXXXXXXRFGASNAPPAYPKVESGASLP 224
K NP A++VYSS NA P YPKVE
Sbjct: 62 KANPYASSVYSS--------------------------------NALPTYPKVE------ 83
Query: 225 RSTTHGGSYGDQNTGFRNPQQYEASRPVPNSYARTPQ-PMYRQPSPMYTNRGPIGRNEAP 283
H R + NSYAR PQ PMYR PSPMYTN+ P+GRNEA
Sbjct: 84 HEIKH--------------------RSLQNSYARPPQQPMYRHPSPMYTNKAPMGRNEAA 123
Query: 284 PRIIPIAALNPYQNMWTIKARVTAKGELRAYHNARGE 320
PRIIPIA LNPYQ+MWTIKARVT K ELR Y NARG+
Sbjct: 124 PRIIPIATLNPYQSMWTIKARVTFKAELRHYTNARGD 160
>Glyma09g34660.1
Length = 563
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/161 (54%), Positives = 114/161 (70%), Gaps = 2/161 (1%)
Query: 2 AVNLTEGAIMAMCTDGVTSDQLQPVLQIIDLKHVQTQQNNATKRYRVVVSDGFLYQQGML 61
A LT+GAIM +C+ G LQPVLQ+I+ K VQ+QQN+ +RYRVV+SDG YQQGML
Sbjct: 173 AKTLTQGAIMEICS-GNDPKNLQPVLQVIEFKLVQSQQNSTIERYRVVLSDGSFYQQGML 231
Query: 62 ATQRNELVDSGKLQKGSIVRLTQFACNHVGDRMXXXXXXXXXXMDKCDLIGEPKPAPRNG 121
ATQ+NEL+ SG+LQ+G+I+RLTQF CN V +R +KC+LIGEP AP+ G
Sbjct: 232 ATQKNELIYSGRLQQGAIIRLTQFICNVVQNRKIIIIVDLDVICEKCELIGEPVAAPK-G 290
Query: 122 ARAQSATGQSGVTSGNSQPFNNSANAGGVTARTSPVGPSLD 162
A A+SATGQSG T GN Q + S+++GG+T + G SLD
Sbjct: 291 APAESATGQSGFTFGNLQYLDRSSHSGGMTTIQNLAGQSLD 331
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/172 (51%), Positives = 118/172 (68%), Gaps = 7/172 (4%)
Query: 1 MAVNLTEGAIMAMCTDGVTSDQLQPVLQIIDLKHVQTQQNNATKRYRVVVSDGFLYQQGM 60
MAV+LT+GAI +C G S+ LQPVLQ+I+LK VQ+QQN+ +RY VV+SDG YQQGM
Sbjct: 1 MAVSLTQGAITEICR-GNCSENLQPVLQVIELKQVQSQQNSTVERYCVVLSDGSFYQQGM 59
Query: 61 LATQRNELVDSGKLQKGSIVRLTQFACNHVGDRMXXXXXXXXXXMDKCDLIGEPKPAPRN 120
LATQ+N+LV SGKLQKGS++RLTQF CN V + +D C+LIG+P P++
Sbjct: 60 LATQKNDLVHSGKLQKGSVLRLTQFLCNVVQNHKIIIIIDLDVILDYCELIGQPVSTPKH 119
Query: 121 GARAQSATGQSGVTSGNSQPFNNSANAGGVTARTSPVGPSLDHPKVNPPATN 172
+ + GV GNSQ N+S++AGG+ AR + G S+ +PK NPPA N
Sbjct: 120 TPK------EPGVNFGNSQSLNSSSHAGGMNARPNVSGSSIYYPKANPPARN 165
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 105/159 (66%), Gaps = 7/159 (4%)
Query: 23 LQPVLQIIDLKHVQTQQNNATKRYRVVVSDGFLYQQGMLATQRNELVDSGKLQKGSIVRL 82
L+PVLQ+++L+ V +QQ++A+ + +V+SDG+ +QQ ML TQ+N+LV SGKLQKGSIVRL
Sbjct: 332 LKPVLQVLELELVNSQQHSASVNFHLVLSDGYHFQQAMLTTQKNQLVRSGKLQKGSIVRL 391
Query: 83 TQFACNHVGDRMXXXXXXXXXXMDKCDLIGEPKPAPRNGARAQSATGQ-SGVTSGNSQPF 141
TQF CN V ++KC+L+G+P AP A+ ATGQ SG T GNSQ
Sbjct: 392 TQFVCNVVQSCKIIMVLDLDVVLEKCELLGQPVAAP-----AEFATGQPSGFTFGNSQSL 446
Query: 142 NNSANAGGVTARTSPVGP-SLDHPKVNPPATNVYSSSSD 179
N+ ++AGGV+ + +L +V PPA N +SSSD
Sbjct: 447 NSCSHAGGVSGLANDFSAMNLATGQVTPPAYNPINSSSD 485
>Glyma15g19090.1
Length = 637
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 66/115 (57%), Gaps = 14/115 (12%)
Query: 207 ASNAPPAYPKVESGASLPRSTTHGGSYGDQNTGFRNPQQYEASRPVPNSYARTPQPMYRQ 266
AS++ A VE+ LPRS S QN N Q + R Q
Sbjct: 126 ASDSASADSTVEN---LPRSYNSNNSSAGQNASHNNTQNF-----------RPTIQPPYQ 171
Query: 267 PSPMYTNRGPIGRNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRAYHNARGEG 321
P P+Y RGP+ +NEAP RIIPIAALNPYQ W IKARVTAKG+LR Y+NARG+G
Sbjct: 172 PPPLYKGRGPVVKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDG 226
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
Query: 1 MAVNLTEGAIMAMCTDGVTSDQLQPVLQIIDLKHVQTQQNNATK--RYRVVVSDGFLYQQ 58
M++NLT AI A+ V + +P++Q++D+ V N+ + RYR+++SD
Sbjct: 1 MSLNLTANAIPAIIGGDVNA---KPLVQVLDVALVSNSNNSQQQQQRYRLLLSDAVFSHH 57
Query: 59 GMLATQRNELVDSGKLQKGSIVRLTQFACNHVGDRMXXXXXXXXXXMDKCDLIGEPKP 116
MLATQ N+ V +G++QKGS+V+L + C + +R MD+ ++IG PKP
Sbjct: 58 AMLATQLNDRVRTGRVQKGSVVQLLDYICTPLKNRKIIVILNMETIMDEFEIIGNPKP 115
>Glyma09g07850.1
Length = 492
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 40/52 (76%)
Query: 270 MYTNRGPIGRNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRAYHNARGEG 321
+Y GP+ +NE P RI+P AALNPYQ W IKARVTAK +LR Y+NARG+G
Sbjct: 135 LYKGCGPVVKNEVPARIVPKAALNPYQCRWAIKARVTAKVDLRRYNNARGDG 186
>Glyma05g00370.1
Length = 708
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 273 NRGPIGRNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRAYHNARGEG 321
N P R R+ P+ +LNPYQ WTIK VT+KG +R Y NARG+G
Sbjct: 162 NSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRTYKNARGDG 210
>Glyma05g00370.2
Length = 620
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 273 NRGPIGRNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRAYHNARGEG 321
N P R R+ P+ +LNPYQ WTIK VT+KG +R Y NARG+G
Sbjct: 162 NSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRTYKNARGDG 210
>Glyma17g08660.2
Length = 527
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 273 NRGPIGRNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRAYHNARGEG 321
N P R R+ P+ +LNPYQ WTIK VT+KG +R Y NARG+G
Sbjct: 161 NSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRNYKNARGDG 209
>Glyma17g08660.1
Length = 619
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 273 NRGPIGRNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRAYHNARGEG 321
N P R R+ P+ +LNPYQ WTIK VT+KG +R Y NARG+G
Sbjct: 161 NSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRNYKNARGDG 209