Miyakogusa Predicted Gene

Lj2g3v1436870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1436870.1 Non Chatacterized Hit- tr|D8T1S9|D8T1S9_SELML
Putative uncharacterized protein OS=Selaginella moelle,31.91,4e-18,A
Receptor for Ubiquitination Targets,F-box domain, cyclin-like; no
description,NULL; SUBFAMILY NOT ,CUFF.37047.1
         (239 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g30000.1                                                       187   8e-48

>Glyma20g30000.1 
          Length = 345

 Score =  187 bits (475), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 111/196 (56%), Positives = 132/196 (67%), Gaps = 10/196 (5%)

Query: 18  IECAELVLPYLTPPELANVSMTCKSLRQVSHSITLRRSSDASRSFENFPVPFLNTT-YPP 76
           ++CAELVLPYLT  ELANVS TCKSL ++S +ITLRR+SDASR+FE  PVPFLNT    P
Sbjct: 26  VQCAELVLPYLTQSELANVSSTCKSLLKLSRAITLRRASDASRAFETLPVPFLNTIDAHP 85

Query: 77  YAHFIYT--PSLLLSSQHLPRQPWGGRSVISPA--PALSAESVSLVDESGRVVSGCDCRD 132
           YAHF+YT    L      LPRQPWG  SVISP+    L AESV  VD SGR  SGCDC +
Sbjct: 86  YAHFLYTRSLLLPSPLPLLPRQPWGS-SVISPSSPTHLRAESVGFVDASGRAASGCDC-E 143

Query: 133 ACSD--CPCSCLDGL-DVXXXXXXXXXXXXXXXXXXXQKGVAVRVKIVRDGRKGWALCAD 189
           AC+   CPC+ LDG+ DV                   + G+AV+V+IVRD +KGW L AD
Sbjct: 144 ACAGPTCPCAGLDGMDDVGRECGPGCRCGPECGNRFTRNGLAVKVRIVRDEKKGWGLKAD 203

Query: 190 QFIRKGQFVFEYAGNL 205
           QFI KG+F+FEY+G L
Sbjct: 204 QFIAKGEFLFEYSGEL 219