Miyakogusa Predicted Gene

Lj2g3v1402710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1402710.1 Non Chatacterized Hit- tr|G7K1E1|G7K1E1_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,64.08,1e-18,seg,NULL,CUFF.36972.1
         (109 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g03950.1                                                        76   7e-15
Glyma01g03780.1                                                        57   6e-09

>Glyma02g03950.1 
          Length = 98

 Score = 76.3 bits (186), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/109 (49%), Positives = 58/109 (53%), Gaps = 11/109 (10%)

Query: 1   MAVAAKCARKTLQQASSSTKTLXXXXXXXXXXXXXXXXXTKFNGSPSSSSQFATHKRPLS 60
           MAVAA  ARKTLQ AS +T+TL                 TK NG  SSSS  ++ KR LS
Sbjct: 1   MAVAANSARKTLQIASFATRTLFSRRSSCA---------TKLNGLASSSS--SSKKRALS 49

Query: 61  CPWFPVQLAGAQVSLTPXXXXXXXXXXXXXXXXXNTNWGCLSEGFATPL 109
               PVQL G QVSLTP                 NTNWGCLSEGFATPL
Sbjct: 50  FSRLPVQLVGGQVSLTPLHSVTASALFTSLLSLHNTNWGCLSEGFATPL 98


>Glyma01g03780.1 
          Length = 101

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 46/99 (46%), Gaps = 11/99 (11%)

Query: 5   AKCARKTLQQASSSTKTLXXXXXXXXXXXXXXXXXTKFNGSPSSSSQFATHKRPLSCPWF 64
           A  ARKT+Q AS++T+TL                 TK NG   S S  +  KR LS    
Sbjct: 5   AVAARKTIQIASAATRTLLSRRSSCP---------TKLNGLAFSYS--SPQKRALSFSRL 53

Query: 65  PVQLAGAQVSLTPXXXXXXXXXXXXXXXXXNTNWGCLSE 103
           PV L GAQVSLTP                 NTNWGCLSE
Sbjct: 54  PVLLVGAQVSLTPLHSATASAMFTSLLSLHNTNWGCLSE 92