Miyakogusa Predicted Gene

Lj2g3v1373360.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1373360.1 tr|Q6Z867|Q6Z867_ORYSJ RNA recognition motif
(RRM)-containing protein-like OS=Oryza sativa subsp.
ja,42.37,2e-17,RRM_1,RNA recognition motif domain; seg,NULL;
RNA-binding domain, RBD,NULL; no description,Nucleotid,CUFF.36859.1
         (210 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g04230.1                                                       165   3e-41
Glyma02g03460.1                                                       153   1e-37

>Glyma01g04230.1 
          Length = 331

 Score =  165 bits (418), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 76/94 (80%), Positives = 87/94 (92%)

Query: 60  AGVIPIGGRVRLANLPKKRNIDRDLKSAMQGVPGIINIVPAVTGNKKTRDPICKGFAFVD 119
           A ++PIGGRV L NLPKK+NI +DLKSA+QG+PGIINIVPAVTGNKKTRDPICKGFA+VD
Sbjct: 69  AELVPIGGRVCLVNLPKKKNIHKDLKSALQGIPGIINIVPAVTGNKKTRDPICKGFAYVD 128

Query: 120 FKRKKDAVRCVELCAGQTITFGKIQKQIKCEVVN 153
           FKR++DAVR VEL  GQTITFGKIQKQIKCE++N
Sbjct: 129 FKREEDAVRFVELYTGQTITFGKIQKQIKCELLN 162


>Glyma02g03460.1 
          Length = 363

 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 83/92 (90%)

Query: 62  VIPIGGRVRLANLPKKRNIDRDLKSAMQGVPGIINIVPAVTGNKKTRDPICKGFAFVDFK 121
           ++PIGGRV L NLPKK+NI +DLKSA+QG+PGI NIVPAVTGNKKTRDPICKGFA+VDF+
Sbjct: 103 LVPIGGRVCLVNLPKKKNIHKDLKSALQGIPGITNIVPAVTGNKKTRDPICKGFAYVDFE 162

Query: 122 RKKDAVRCVELCAGQTITFGKIQKQIKCEVVN 153
            ++DA+R VEL  GQ ITFGKIQKQIKCE++N
Sbjct: 163 CEEDAIRFVELYTGQAITFGKIQKQIKCELLN 194