Miyakogusa Predicted Gene

Lj2g3v1277840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1277840.1 Non Chatacterized Hit- tr|I1JE48|I1JE48_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,61.73,2e-17,coiled-coil,NULL,CUFF.36674.1
         (314 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g11990.1                                                        95   9e-20

>Glyma02g11990.1 
          Length = 182

 Score = 95.1 bits (235), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 60/81 (74%), Gaps = 2/81 (2%)

Query: 211 HQARCKSKNDLSPPPMIIGPRNEQPRGRILRLSKMKHQARCKENSTVKEGAEEHMDMSQY 270
           HQARCKSKNDL+P  MI    NEQP+GRILRLS+MKH+AR K NSTVK+G E+HMD S  
Sbjct: 4   HQARCKSKNDLAPQ-MISRAENEQPKGRILRLSQMKHRARSKGNSTVKDGTEKHMDQSLP 62

Query: 271 CNRLKENSEAQKESIPVKRLR 291
           CNR K++S +  E +P    R
Sbjct: 63  CNRFKDSSPSV-EDVPAHNFR 82



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 236 RGRILRLSKMKHQARCKENSTVKEGAEEHMDMSQYCNRLKENSEAQKESIPVKRLRLTQL 295
           R R  +  K++ Q R +   +V       M  S     LK NSEAQKE +PVKRLRL+QL
Sbjct: 106 RLRAFKTKKLRQQFRRECKRSVSSAGLHAMGTS--LTGLKANSEAQKEFVPVKRLRLSQL 163

Query: 296 RREVRAGSLSSIMQ 309
           RRE R G+    MQ
Sbjct: 164 RREARLGNPFPAMQ 177