Miyakogusa Predicted Gene

Lj2g3v1277770.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1277770.1 tr|A9RZT4|A9RZT4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_122100,38.17,0.000000000000001,Translational machinery
components,NULL; Ribosomal_L18p,Ribosomal protein L18/L5; no
description,NUL,CUFF.36666.1
         (164 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g12040.1                                                       258   3e-69
Glyma01g05870.1                                                       137   7e-33
Glyma15g20680.1                                                        79   1e-15
Glyma09g09110.1                                                        78   5e-15

>Glyma02g12040.1 
          Length = 170

 Score =  258 bits (658), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 128/167 (76%), Positives = 141/167 (84%), Gaps = 3/167 (1%)

Query: 1   MAQLNAPALHFKSSSVFGINPKSFIYFQGQSRCLIKKPLVVEARA--NTRTESPKIRNRR 58
           MAQ+NAP L FK+S++FGI P SF+ FQ QSR + KKPLV+EARA  NTR ES KIRNRR
Sbjct: 4   MAQVNAPMLQFKNSALFGIQPNSFVCFQTQSRSITKKPLVIEARARANTRKESGKIRNRR 63

Query: 59  MQKKFNGTARHPRLSVFCSDKQLYAMLVDDKNKKCLFYGSTLHKSFRENPPCSTVEAAQR 118
           M KK+NGTA HPRLSVFCSDKQLYAMLVDDKNKKCLFYGSTL KS R++PPCST+EAAQR
Sbjct: 64  MLKKYNGTATHPRLSVFCSDKQLYAMLVDDKNKKCLFYGSTLQKSIRQDPPCSTLEAAQR 123

Query: 119 VGEALVKACTDLKINEISSYDRNGF-GRGQRLDAFEIAISSYGFLQR 164
           VGEALVKAC DL INEI SYDRNG   R ++L AFE AISSYGFL R
Sbjct: 124 VGEALVKACVDLNINEILSYDRNGLRQREEKLKAFENAISSYGFLPR 170


>Glyma01g05870.1 
          Length = 215

 Score =  137 bits (344), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 97/227 (42%), Positives = 111/227 (48%), Gaps = 75/227 (33%)

Query: 1   MAQLNAPAL-HFKSSSVFGINPKSFIYFQGQSRCLIKKPLVVE--ARANTRTESPKIRNR 57
           MAQ+N P L  FK+S++FGI P SF      + C+ KKPLV+E  ARANTR ES KIRNR
Sbjct: 1   MAQVNVPMLLQFKNSALFGIQPNSFSLSLSSTICITKKPLVIEARARANTRKESAKIRNR 60

Query: 58  RMQKK--FNGTA--RHPRLSVFCSDKQLYAM--------------------------LVD 87
           RMQKK   + TA  +  +        QLYA                           L  
Sbjct: 61  RMQKKVCLSVTAFIKETKFIKVLECLQLYATPLLAAKYHVFPPSAINTIHDFVTHPRLSM 120

Query: 88  DKNKKCLFYGSTLHKSFRENPPCSTV------------------------------EAAQ 117
            K KKCL YGSTL KSFR++PPCST+                              EAA 
Sbjct: 121 TKIKKCLLYGSTLQKSFRQDPPCSTLLTNQHETWNASFSISFVFWGLIRLLLSIFFEAAH 180

Query: 118 RVGEALVKACTDLKINEISSYDRNGFGRGQRLDAFEIAISSYGFLQR 164
           RVGEALVKAC DL I+EISSYD NG              SSYGFL R
Sbjct: 181 RVGEALVKACVDLNISEISSYDHNGLH------------SSYGFLPR 215


>Glyma15g20680.1 
          Length = 162

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 4/127 (3%)

Query: 38  PLVVEARANTRTESPKIRNRRMQKKFNGTARHPRLSVFCSDKQLYAMLVDDKNKKCLFYG 97
           P VVEA+  TR E    R+ R++KK  GT   PRLSVF S+K L   ++DD   + L   
Sbjct: 35  PFVVEAKDRTRREDRTARHTRIRKKVEGTPERPRLSVFRSNKHLSVQVIDDTAMRTLASV 94

Query: 98  STLHKSFREN---PPCSTVEAAQRVGEALVKACTDLKINEISSYDRNGFGRGQRLDAFEI 154
           ST+ K+  +        TVE A+R+GE + K+C +  I ++ ++DR G+    R+ A   
Sbjct: 95  STMQKTVADEFNYSAGPTVEVAKRMGEIIAKSCLEKGITKV-AFDRGGYPYHGRVQALAE 153

Query: 155 AISSYGF 161
           A   +G 
Sbjct: 154 AAREHGL 160


>Glyma09g09110.1 
          Length = 160

 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 4/127 (3%)

Query: 38  PLVVEARANTRTESPKIRNRRMQKKFNGTARHPRLSVFCSDKQLYAMLVDDKNKKCLFYG 97
           P V+EA+  TR E    R+ R++KK  GT   PRLSVF S+K L   ++DD     L   
Sbjct: 33  PFVLEAKDRTRREDRSARHTRIRKKVEGTPERPRLSVFRSNKHLSVQVIDDTKMHTLASI 92

Query: 98  STLHKSFREN---PPCSTVEAAQRVGEALVKACTDLKINEISSYDRNGFGRGQRLDAFEI 154
           ST+ K+  E        T+E A+R+GE + K+C +  I ++ ++DR G+    R+ A   
Sbjct: 93  STMQKTVAEEFNYSAGPTLEVAKRMGEIIAKSCLEKGITKV-AFDRGGYPYHGRVQALAE 151

Query: 155 AISSYGF 161
           A   +G 
Sbjct: 152 AAREHGL 158