Miyakogusa Predicted Gene

Lj2g3v1228820.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1228820.1 Non Chatacterized Hit- tr|D7MEY9|D7MEY9_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,43.26,3e-18,seg,NULL; RPAP1_N,RNA polymerase II-associated
protein 1, N-terminal; SUBFAMILY NOT NAMED,NULL; FAMI,CUFF.36532.1
         (380 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g08050.1                                                       197   2e-50
Glyma02g13360.1                                                       164   1e-40

>Glyma01g08050.1 
          Length = 425

 Score =  197 bits (501), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 147/308 (47%), Positives = 176/308 (57%), Gaps = 56/308 (18%)

Query: 74  HWRPLSSKXXXXXXXXXXXXXXXXXXXXKAFMEFESVSAFANPVQRRRKKDMDFRKWKEI 133
           HWRPLSSK                    K F EFE VSAFA PVQRRRKK +DFRKWKEI
Sbjct: 1   HWRPLSSKGNDDGEGDDNVEDEED----KNFQEFEKVSAFAMPVQRRRKKGLDFRKWKEI 56

Query: 134 TQDDNSSIGKESEEDVSSFSRNTRKKKNANGSMNAGKKTSTLSDDNVLASAELGAKMQLD 193
           T+DD+SS+GKE+EEDVSSFS+ T  KKN  GS +  KKTS+ SDDNV++  ++  K  LD
Sbjct: 57  TRDDSSSMGKETEEDVSSFSQ-TTGKKNKKGSKSTYKKTSS-SDDNVISPMKVDTKPLLD 114

Query: 194 NSDGGFINAATSMELDVSNKVKPDLERI-HSDRTLDNNVDSLDVLGPEKNYXXXXXXXXX 252
           NSD                    DL+R   +D T                          
Sbjct: 115 NSD--------------------DLQRPGQTDLT-------------------------- 128

Query: 253 XXXXEQEPMSFEGEIDAENRARIKQMSAEEIVEARAEIMEKISPALLEVLQKRGXXXXXX 312
               E+E +S E EIDAENRA+I+QMSAEEI EA+AEIMEK+SPALL+ LQKRG      
Sbjct: 129 SSMREKESVSLESEIDAENRAQIQQMSAEEIAEAQAEIMEKMSPALLKALQKRG---QDK 185

Query: 313 XXXXXXXMGTGSESVNRHVQNSQDAKCVHKEDDISHTNMTPPSRQKLDDEKIXXXXXXXX 372
                  +GTGS+SVN HVQ+ QDAK +H ED I+ T + PPS++KLDDEKI        
Sbjct: 186 LKKLKSEVGTGSDSVNGHVQSPQDAKHLHTEDGITQTVIAPPSKEKLDDEKISTKTSTTA 245

Query: 373 XXXLWNAW 380
               WNAW
Sbjct: 246 SSSAWNAW 253


>Glyma02g13360.1 
          Length = 1387

 Score =  164 bits (416), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/193 (49%), Positives = 118/193 (61%), Gaps = 14/193 (7%)

Query: 192 LDNSDGGFINAATSMELDVSNKVK----PDLERIHSDRTLDNNVDSLDVLGPEKNYXXXX 247
           LDNSDGGFIN+ T+ME+D  NK +    P L++I SD   D N  SLDV  P +      
Sbjct: 9   LDNSDGGFINSTTTMEVDTLNKEQNESVPGLDQISSDWMPDYNFGSLDVQRPGQT----- 63

Query: 248 XXXXXXXXXEQEPMSFEGEIDAENRARIKQMSAEEIVEARAEIMEKISPALLEVLQKRGX 307
                    EQ+ +S + EIDAENRARI+QMSAEEI EA+ EIMEK+SPALL++LQKRG 
Sbjct: 64  --DLNSSMLEQKSVSLDSEIDAENRARIQQMSAEEIAEAQTEIMEKMSPALLKLLQKRG- 120

Query: 308 XXXXXXXXXXXXMGTGSESVNRHVQNSQDAKCVHKEDDISHTNMTPPSRQKLDDEKIXXX 367
                       +  GSESVN H Q+ QDAK +H ED I+ T + PPS++KLDDEKI   
Sbjct: 121 --QNKLKKLKLEVDIGSESVNGHAQSPQDAKHLHTEDGIAQTVIVPPSKEKLDDEKISTK 178

Query: 368 XXXXXXXXLWNAW 380
                    WNAW
Sbjct: 179 TSTTASSSAWNAW 191