Miyakogusa Predicted Gene

Lj2g3v1196520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1196520.1 Non Chatacterized Hit- tr|C0HIK1|C0HIK1_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,67.14,2e-18,seg,NULL;
DUF2232,Protein of unknown function DUF2232, membrane,CUFF.36446.1
         (307 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g14240.1                                                       393   e-109

>Glyma02g14240.1 
          Length = 287

 Score =  393 bits (1010), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/239 (83%), Positives = 213/239 (89%), Gaps = 1/239 (0%)

Query: 70  RVSNIGVPVFSSXXXXXXXXXXXXVS-PDLSPNGPVFQKTLQLVECSMFAALTGLVYFLS 128
           RVSN+GV V  +            +   DLSPNG V+QKTLQLVECSMFAALTGLVYFLS
Sbjct: 49  RVSNVGVSVCRTEHHEEEEDKGVSLELHDLSPNGEVYQKTLQLVECSMFAALTGLVYFLS 108

Query: 129 NSLAIENYFSCFFSLPIVISSMRWGVDAGRKTLVSTTILLFVLSGPVKALTYLLKHGIVG 188
           NSLAIENYFSCFFSLPIVISSMRWGVDAGRKTLV+TTILL VLSGPVKALTYLLKHGIVG
Sbjct: 109 NSLAIENYFSCFFSLPIVISSMRWGVDAGRKTLVATTILLLVLSGPVKALTYLLKHGIVG 168

Query: 189 YTMGTLWRLETSWNLSIFLCTIVRALGSVGFVLVTSFLIRENILALITINIHASLTFVLT 248
           +TMGTLWR   SWN+SIFLCTIVRALG+VGFVL++SFLIRENILALITINIHASLTF+LT
Sbjct: 169 FTMGTLWRTGASWNMSIFLCTIVRALGAVGFVLISSFLIRENILALITINIHASLTFLLT 228

Query: 249 AAGVNSIPSMNVIYTLFGTLVLINCGCFMFLLHMLYSVFLTRMGMKSSLKLPRWLERAI 307
           AAGV SIPSMNVIYTLFG LVLIN GCFMFLLH+LYSVFLTRMGMKSSL+LPRWLERAI
Sbjct: 229 AAGVTSIPSMNVIYTLFGILVLINSGCFMFLLHLLYSVFLTRMGMKSSLRLPRWLERAI 287