Miyakogusa Predicted Gene

Lj2g3v1106410.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1106410.1 tr|A8NG41|A8NG41_COPC7 Transcription/repair
factor TFIIH subunit Tfb3 OS=Coprinopsis cinerea
(strain,59.49,6e-17,seg,NULL; MAT1,Cdk-activating kinase assembly
factor MAT1, centre; TRANSCRIPTION/REPAIR FACTOR TFIIH,CUFF.36273.1
         (186 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g04910.1                                                       263   7e-71
Glyma07g34810.1                                                        67   8e-12

>Glyma19g04910.1 
          Length = 188

 Score =  263 bits (672), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 134/191 (70%), Positives = 146/191 (76%), Gaps = 8/191 (4%)

Query: 1   MVISSTNPHNKEIAIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGVDVAAIE 60
           MV+SSTNPHNKEIAIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEG+DV+ IE
Sbjct: 1   MVVSSTNPHNKEIAIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGIDVSDIE 60

Query: 61  AKIAKYQEENSEQIMVNXXXXXXXXXXXXXXXXXXXXXXXNDVGASQD----FGAVPQGQ 116
           AKIAKYQEEN+EQIM+N                       +D   +Q+    FGAVPQGQ
Sbjct: 61  AKIAKYQEENAEQIMINRARKAEELAAAMAASKGQPAQTDDDSATNQNSQAGFGAVPQGQ 120

Query: 117 YAPTFA-GQPRPTGMAPQPLPLGGSDMPGYAGDDDETMRLXXXXXXXXXXWSLEISRKRA 175
           YAPTFA GQPRPTGMAPQPLPLGG DMPG+AGDD+ET RL          WS +ISRKRA
Sbjct: 121 YAPTFAGGQPRPTGMAPQPLPLGGGDMPGFAGDDEETKRL---RTERAGGWSGDISRKRA 177

Query: 176 LEEAFGSMWVC 186
           LEEAFGS+WVC
Sbjct: 178 LEEAFGSIWVC 188


>Glyma07g34810.1 
          Length = 168

 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 35/43 (81%)

Query: 23  FNKREDDFPSLREYNDYLEEVEDMTFNLIEGVDVAAIEAKIAK 65
           FNK +DD PSLREYNDY EEVE MT +L EG++ AAIEAKI +
Sbjct: 121 FNKHQDDLPSLREYNDYKEEVEVMTLDLTEGINAAAIEAKINR 163