Miyakogusa Predicted Gene

Lj2g3v1080750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1080750.1 tr|G7IP47|G7IP47_MEDTR DNA-directed RNA
polymerase subunit beta OS=Medicago truncatula
GN=MTR_2g0189,62.82,4e-19,N7-RELATED PROTEIN,NULL; F-BOX/LEUCINE RICH
REPEAT PROTEIN,NULL; RNI-like,NULL; no description,NULL,CUFF.36211.1
         (204 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g29200.1                                                       185   2e-47
Glyma15g09890.1                                                       183   1e-46
Glyma06g10680.3                                                        75   4e-14
Glyma06g10680.2                                                        75   4e-14
Glyma06g10680.1                                                        75   4e-14
Glyma04g10850.2                                                        72   3e-13
Glyma04g10850.1                                                        72   3e-13
Glyma02g36660.1                                                        64   9e-11
Glyma02g36660.2                                                        60   2e-09
Glyma06g43000.1                                                        50   2e-06
Glyma12g15360.1                                                        49   3e-06
Glyma17g02300.1                                                        49   4e-06

>Glyma13g29200.1 
          Length = 311

 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 137/202 (67%), Gaps = 1/202 (0%)

Query: 1   MWRTIDLTNQPPSYPHTAMLKLCRYAIEQSCGHLEDISIDFFCTDEVLKYIADSGSHLRR 60
           +WRTID+ N         +L +C  AI+ S GHL  I++++F TD++L +I  S S+LR 
Sbjct: 54  LWRTIDMRNLGDIGLDFHLLAMCHRAIDYSSGHLLHINVEYFGTDDLLHHITHSTSNLRS 113

Query: 61  MGLLMKSWGISDVGMIELVKKLPLLEEFEISFNCLPKNILELIGQSCPFLKVIKFTLFIG 120
           + L    + ISD G+ E+ +KLP LEE +IS + L K+ LE IGQ CP LK +KF +   
Sbjct: 114 LRLAC-CYQISDEGLCEIAEKLPQLEELDISISNLTKDPLEAIGQCCPHLKTLKFNMEGY 172

Query: 121 FPKGFECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLESLDLRGCSNVDLS 180
                EC+++AF IA+TMP L HLQL  N+LTN+GLLAILDGC  LESLDLR C NV+L+
Sbjct: 173 RRPHIECDEEAFAIAETMPGLHHLQLFGNKLTNEGLLAILDGCPLLESLDLRQCFNVNLA 232

Query: 181 GSLGERCCKQIKYLYLPEDVSE 202
           GSLG+RC +QIK L LP D ++
Sbjct: 233 GSLGKRCAEQIKELRLPCDPTD 254


>Glyma15g09890.1 
          Length = 318

 Score =  183 bits (465), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/204 (48%), Positives = 137/204 (67%), Gaps = 3/204 (1%)

Query: 1   MWRTIDLTNQPPSYPHTAMLKLCRYAIEQSCGHLEDISIDFFCTDEVLKYIADSGSHLRR 60
           +WRTID+ N      +   L +C  AI+ S GHL  I+I++F TD++L++I  S S+LR 
Sbjct: 60  LWRTIDMRNSGDIETNFVFLAMCHRAIDYSSGHLLHINIEYFATDDLLRHITHSTSNLRS 119

Query: 61  MGLLMKSWGISDVGMIELVKKLPLLEEFEISFNCL--PKNILELIGQSCPFLKVIKFTLF 118
           + L    + ISD G+ E+ K+LP LEE +IS +     ++ LE +G+ C  LK +KF + 
Sbjct: 120 LRLAC-CYQISDEGLCEIAKELPQLEELDISISSFNPTRDPLEAVGRCCRHLKTLKFNMK 178

Query: 119 IGFPKGFECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLESLDLRGCSNVD 178
                  EC+++AF IA+TMP L HLQL  N+LTN+GLLAILDGC HLESLDLR C NV+
Sbjct: 179 GYRRPHIECDEEAFAIAETMPTLHHLQLFGNKLTNEGLLAILDGCPHLESLDLRQCFNVN 238

Query: 179 LSGSLGERCCKQIKYLYLPEDVSE 202
           L+GSLG+RC +QIK L LP D ++
Sbjct: 239 LAGSLGKRCAEQIKELRLPCDPTD 262


>Glyma06g10680.3 
          Length = 321

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 95/181 (52%), Gaps = 6/181 (3%)

Query: 2   WRTIDLTNQPPSYPHTAMLKLCRYAIEQSCGHLEDISIDFFCTDEVLKYIADSGSHLRRM 61
           W+ ID+ +         + +L    I +SCG L  +S+    T+ +  +IA++   L  +
Sbjct: 51  WQEIDIKDWSNRCQPDQLDRLLEMLITRSCGTLRKLSVSGLQTESIFTFIAENACSLHTL 110

Query: 62  GLLMKSWGISDVGMIELVKKLPLLEEFEISFNCLP--KNILELIGQSCPFLKVIKFTLF- 118
            L   S  ++D  + ++  +L ++   ++S+ C+      LE+IG++C  L+ +   +  
Sbjct: 111 RLPRSS--MNDSIVEQIAGRLSMISFLDVSY-CIKIGPYALEMIGKNCKLLEGLCRNMHP 167

Query: 119 IGFPKGFECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLESLDLRGCSNVD 178
           +   +    +D+A+ IA TMP+L+HL++  + ++  G+L IL  C  LE LD RGC  V 
Sbjct: 168 LDTAEKPHQDDEAYAIASTMPKLKHLEMAYHLISTSGVLQILANCPKLEFLDQRGCWGVT 227

Query: 179 L 179
           L
Sbjct: 228 L 228


>Glyma06g10680.2 
          Length = 321

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 95/181 (52%), Gaps = 6/181 (3%)

Query: 2   WRTIDLTNQPPSYPHTAMLKLCRYAIEQSCGHLEDISIDFFCTDEVLKYIADSGSHLRRM 61
           W+ ID+ +         + +L    I +SCG L  +S+    T+ +  +IA++   L  +
Sbjct: 51  WQEIDIKDWSNRCQPDQLDRLLEMLITRSCGTLRKLSVSGLQTESIFTFIAENACSLHTL 110

Query: 62  GLLMKSWGISDVGMIELVKKLPLLEEFEISFNCLP--KNILELIGQSCPFLKVIKFTLF- 118
            L   S  ++D  + ++  +L ++   ++S+ C+      LE+IG++C  L+ +   +  
Sbjct: 111 RLPRSS--MNDSIVEQIAGRLSMISFLDVSY-CIKIGPYALEMIGKNCKLLEGLCRNMHP 167

Query: 119 IGFPKGFECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLESLDLRGCSNVD 178
           +   +    +D+A+ IA TMP+L+HL++  + ++  G+L IL  C  LE LD RGC  V 
Sbjct: 168 LDTAEKPHQDDEAYAIASTMPKLKHLEMAYHLISTSGVLQILANCPKLEFLDQRGCWGVT 227

Query: 179 L 179
           L
Sbjct: 228 L 228


>Glyma06g10680.1 
          Length = 321

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 95/181 (52%), Gaps = 6/181 (3%)

Query: 2   WRTIDLTNQPPSYPHTAMLKLCRYAIEQSCGHLEDISIDFFCTDEVLKYIADSGSHLRRM 61
           W+ ID+ +         + +L    I +SCG L  +S+    T+ +  +IA++   L  +
Sbjct: 51  WQEIDIKDWSNRCQPDQLDRLLEMLITRSCGTLRKLSVSGLQTESIFTFIAENACSLHTL 110

Query: 62  GLLMKSWGISDVGMIELVKKLPLLEEFEISFNCLP--KNILELIGQSCPFLKVIKFTLF- 118
            L   S  ++D  + ++  +L ++   ++S+ C+      LE+IG++C  L+ +   +  
Sbjct: 111 RLPRSS--MNDSIVEQIAGRLSMISFLDVSY-CIKIGPYALEMIGKNCKLLEGLCRNMHP 167

Query: 119 IGFPKGFECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLESLDLRGCSNVD 178
           +   +    +D+A+ IA TMP+L+HL++  + ++  G+L IL  C  LE LD RGC  V 
Sbjct: 168 LDTAEKPHQDDEAYAIASTMPKLKHLEMAYHLISTSGVLQILANCPKLEFLDQRGCWGVT 227

Query: 179 L 179
           L
Sbjct: 228 L 228


>Glyma04g10850.2 
          Length = 321

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 94/182 (51%), Gaps = 8/182 (4%)

Query: 2   WRTIDLTNQPPSYPHTAMLKLCRYAIEQSCGHLEDISIDFFCTDEVLKYIADSGSHLRRM 61
           W+ ID+ +         + +L    I +S G L  +S+    T+ +  +IA++   L  +
Sbjct: 51  WQEIDIKDWSNRCQPDQLDRLLEMLITRSSGSLRKLSVSGLQTESIFTFIAENACSLHTL 110

Query: 62  GLLMKSWGISDVGMIELVKKLPLLEEFEISFNCLP--KNILELIGQSCPFLKVI--KFTL 117
            L   S  ++D  + ++  +L ++   ++S+ C+      LE+IG++C  L+ +      
Sbjct: 111 RLPRSS--MNDSIVEQIAGRLSMISFLDVSY-CIKIGPYALEMIGKNCKLLEGLCRNMHP 167

Query: 118 FIGFPKGFECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLESLDLRGCSNV 177
                K F+ +D+A+ IA TMP+L+HL++  + ++  G+L IL  C  LE LD RGC  V
Sbjct: 168 LDTASKPFQ-DDEAYAIASTMPKLKHLEMAYHLISTSGVLQILANCPKLEFLDQRGCWGV 226

Query: 178 DL 179
            L
Sbjct: 227 TL 228


>Glyma04g10850.1 
          Length = 321

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 94/182 (51%), Gaps = 8/182 (4%)

Query: 2   WRTIDLTNQPPSYPHTAMLKLCRYAIEQSCGHLEDISIDFFCTDEVLKYIADSGSHLRRM 61
           W+ ID+ +         + +L    I +S G L  +S+    T+ +  +IA++   L  +
Sbjct: 51  WQEIDIKDWSNRCQPDQLDRLLEMLITRSSGSLRKLSVSGLQTESIFTFIAENACSLHTL 110

Query: 62  GLLMKSWGISDVGMIELVKKLPLLEEFEISFNCLP--KNILELIGQSCPFLKVI--KFTL 117
            L   S  ++D  + ++  +L ++   ++S+ C+      LE+IG++C  L+ +      
Sbjct: 111 RLPRSS--MNDSIVEQIAGRLSMISFLDVSY-CIKIGPYALEMIGKNCKLLEGLCRNMHP 167

Query: 118 FIGFPKGFECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLESLDLRGCSNV 177
                K F+ +D+A+ IA TMP+L+HL++  + ++  G+L IL  C  LE LD RGC  V
Sbjct: 168 LDTASKPFQ-DDEAYAIASTMPKLKHLEMAYHLISTSGVLQILANCPKLEFLDQRGCWGV 226

Query: 178 DL 179
            L
Sbjct: 227 TL 228


>Glyma02g36660.1 
          Length = 306

 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 20/174 (11%)

Query: 21  KLCRYAIEQSCGHLEDISIDFFCTDEVLKYIADSGSHLRRMGLLMKSWGISDVGMIELVK 80
            + R  +E +   L  I I   C+D  L  +A S  +L  +  +     ++D  +  +  
Sbjct: 84  NMLRSVVEWAQSSLTHIRIRH-CSDRSLALVAQSCPNLEVL-FIRSCPRVTDDSISRIAL 141

Query: 81  KLPLLEEFEISFNC--LPKNILELIGQSCPFLKVIKFTLFIGF---------PKGF---- 125
             P L E +IS+ C  +    L LIG++CP LKV+K  L             P  +    
Sbjct: 142 SCPKLRELDISY-CYEITHESLVLIGRNCPNLKVLKRNLMNWLDPSQHRGIVPDDYLNAC 200

Query: 126 --ECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLESLDLRGCSNV 177
             + +D+A  IA +MP L  L++  ++LT  GL +I  GC +LE LDL GC+N+
Sbjct: 201 PQDGDDEAAAIANSMPGLEQLEIRFSKLTAKGLNSICQGCPNLEFLDLSGCANL 254


>Glyma02g36660.2 
          Length = 296

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 18/125 (14%)

Query: 70  ISDVGMIELVKKLPLLEEFEISFNC--LPKNILELIGQSCPFLKVIKFTLFIGF------ 121
           ++D  +  +    P L E +IS+ C  +    L LIG++CP LKV+K  L          
Sbjct: 121 VTDDSISRIALSCPKLRELDISY-CYEITHESLVLIGRNCPNLKVLKRNLMNWLDPSQHR 179

Query: 122 ---PKGF------ECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAILDGCRHLESLDLR 172
              P  +      + +D+A  IA +MP L  L++  ++LT  GL +I  GC +LE LDL 
Sbjct: 180 GIVPDDYLNACPQDGDDEAAAIANSMPGLEQLEIRFSKLTAKGLNSICQGCPNLEFLDLS 239

Query: 173 GCSNV 177
           GC+N+
Sbjct: 240 GCANL 244


>Glyma06g43000.1 
          Length = 701

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 19/157 (12%)

Query: 37  ISIDFFCTDEVLKYIADSGSHLRRM----GLLMKSWGISDVGMIELVKKLPLLEEFEISF 92
           +SI   C    L ++AD+ S   R     G   +   IS   ++ L   LPLLEE  +  
Sbjct: 232 VSIASNCPKLSLLHLADTSSFSSRREEDEGFDGEDASISRAALMTLFSGLPLLEELVLD- 290

Query: 93  NCLPKNI------LELIGQSCPFLKVIKFTLFIGFPKGFECNDDAFVIAKTMPELRHLQL 146
             + KN+       E++G  CP L+V+K   F G    FE   D   +   +  L     
Sbjct: 291 --VCKNVRESSFAFEVVGSKCPNLRVLKLGQFQGICLAFESRLDGIALCHGLQSLS---- 344

Query: 147 IAN--RLTNDGLLAILDGCRHLESLDLRGCSNVDLSG 181
           + N   L + GL+ I  GC  L   +L+GC  V   G
Sbjct: 345 VGNCADLDDMGLIEIARGCSRLVRFELQGCRLVTERG 381


>Glyma12g15360.1 
          Length = 688

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 18/156 (11%)

Query: 37  ISIDFFCTDEVLKYIADSGSHLRRM---GLLMKSWGISDVGMIELVKKLPLLEEFEISFN 93
           ++I   C    L ++AD+ S L R    G   +   +S   ++ L   LPLLEE  +   
Sbjct: 244 VAIPSNCPKLSLLHLADTSSFLNRREDEGFDGEDASVSRAALLTLFSGLPLLEELVLD-- 301

Query: 94  CLPKNI------LELIGQSCPFLKVIKFTLFIGFPKGFECNDDAFVIAKTMPELRHLQLI 147
            + KN+      LE++G  CP L+V+K   F G    F    D   +   +  L     +
Sbjct: 302 -VCKNVRESSFALEVLGSKCPNLRVLKLGQFQGICLAFGSRLDGIALCHGLQSLS----V 356

Query: 148 AN--RLTNDGLLAILDGCRHLESLDLRGCSNVDLSG 181
            N   L + GL+ I  GC  L   +L+GC  V   G
Sbjct: 357 GNCADLDDMGLIEIARGCSRLVRFELQGCRLVTERG 392


>Glyma17g02300.1 
          Length = 584

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 13/154 (8%)

Query: 26  AIEQSCGHLEDISIDFF--CTDEVLKYIA-DSGSHLRRMGLLMKSWGISDVGMIELVKKL 82
           A+ Q C  LED+++ F    TD  L  +A   G  L+ +G+      I+D+ M  +    
Sbjct: 159 AVGQCCKQLEDLNLRFCEGLTDTGLVELALGVGKSLKSLGV-AACAKITDISMEAVGSHC 217

Query: 83  PLLEEFEISFNCLPKNILELIGQSCPFLKVIKFTLFIGFPKGFECNDDAF-VIAKTMPEL 141
             LE   +   C+    L  + Q CP LKV+K        +     DDA   +      L
Sbjct: 218 RSLETLSLDSECIHNKGLLAVAQGCPTLKVLKL-------QCINVTDDALQAVGANCLSL 270

Query: 142 RHLQLIA-NRLTNDGLLAILDGCRHLESLDLRGC 174
             L L +  R T+ GL  I +GC+ L++L L  C
Sbjct: 271 ELLALYSFQRFTDKGLRGIGNGCKKLKNLTLIDC 304