Miyakogusa Predicted Gene

Lj2g3v1034410.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1034410.1 Non Chatacterized Hit- tr|J3LYN5|J3LYN5_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB04G2,60.32,0.0000000000007,no description,RNA-binding, CRM
domain; seg,NULL; CRM,RNA-binding, CRM domain; SUBFAMILY NOT
NAMED,N,CUFF.36052.1
         (204 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g01700.1                                                       350   6e-97
Glyma19g01710.1                                                       319   1e-87
Glyma17g06210.1                                                       170   8e-43
Glyma17g06210.2                                                       170   8e-43
Glyma10g32920.1                                                       170   9e-43
Glyma20g34730.1                                                       170   9e-43
Glyma07g10270.1                                                       161   6e-40
Glyma09g31620.1                                                       159   2e-39
Glyma08g04630.1                                                       132   2e-31
Glyma02g09730.1                                                       118   4e-27
Glyma15g43130.1                                                        71   6e-13
Glyma19g02630.1                                                        62   3e-10

>Glyma19g01700.1 
          Length = 993

 Score =  350 bits (898), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 165/204 (80%), Positives = 177/204 (86%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMXXXXX 60
           MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSD VSRD++ GDA QHM     
Sbjct: 186 MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDKVSRDDNTGDAMQHMDEDAK 245

Query: 61  XXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLLV 120
                  HSSE NS  YAG SS  KT+KPALIQGVG+PNKVRFQLPGEAELA+DADSLL 
Sbjct: 246 NFDKRESHSSEKNSVTYAGKSSNVKTAKPALIQGVGSPNKVRFQLPGEAELAKDADSLLT 305

Query: 121 GLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPIP 180
           G+GPRF DWWGY+PLPVDADLLPAV+PGYRKPFRLLPYGVKPKLTDDEMTT+RRL + +P
Sbjct: 306 GIGPRFIDWWGYDPLPVDADLLPAVIPGYRKPFRLLPYGVKPKLTDDEMTTMRRLGKHLP 365

Query: 181 SHFALGRNRKLQGLAAAIIKLWER 204
            HFALGRN+KL GLAAAIIKLWER
Sbjct: 366 CHFALGRNKKLHGLAAAIIKLWER 389


>Glyma19g01710.1 
          Length = 824

 Score =  319 bits (817), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 154/205 (75%), Positives = 167/205 (81%), Gaps = 1/205 (0%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSR-DEHIGDAEQHMXXXX 59
           M+RTHDLLERKTGGLVVWRSG+KIILYRG DYKYPYFLSD V+R D    DA QH+    
Sbjct: 1   MRRTHDLLERKTGGLVVWRSGTKIILYRGADYKYPYFLSDKVTRQDNTSNDALQHVNADD 60

Query: 60  XXXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLL 119
                   H SE NS   A  +S ++T+KPALI GVGTPNKVRFQLP EAELAED D LL
Sbjct: 61  KYCDKSESHLSEKNSVACAVENSNAETAKPALILGVGTPNKVRFQLPDEAELAEDTDCLL 120

Query: 120 VGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPI 179
            GLGPRFTDWWG +PLPVDADLLPAV+ GYRKPFRLLPYGV PKLTDDEMTTL+RL +P+
Sbjct: 121 TGLGPRFTDWWGGDPLPVDADLLPAVIHGYRKPFRLLPYGVNPKLTDDEMTTLKRLGKPL 180

Query: 180 PSHFALGRNRKLQGLAAAIIKLWER 204
           P HFALGRNRKLQGLAAAIIKLWER
Sbjct: 181 PCHFALGRNRKLQGLAAAIIKLWER 205


>Glyma17g06210.1 
          Length = 747

 Score =  170 bits (431), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 91/205 (44%), Positives = 120/205 (58%), Gaps = 34/205 (16%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMXXXXX 60
           MK+ H +LE K GG+V+WRSGS I+LYRG  YK P      +   + +  A+++      
Sbjct: 224 MKKAHQILESKIGGIVIWRSGSSIVLYRGMAYKLP-----CIENYKKVNLAKENA----- 273

Query: 61  XXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAE--DADSL 118
                       +  ++ G+ S  +      ++ +            E EL E  D + L
Sbjct: 274 -----------VDHSLHVGNGSDGQAKSAEYLKDMS-----------EEELMEMCDLNHL 311

Query: 119 LVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRP 178
           L  LGPRF DW G +PLPVDADLLPAVVPGY+ PFRLLPY ++P LT+ EMT  RRL+R 
Sbjct: 312 LDELGPRFKDWTGRQPLPVDADLLPAVVPGYKTPFRLLPYRIRPCLTNKEMTNFRRLART 371

Query: 179 IPSHFALGRNRKLQGLAAAIIKLWE 203
              HFALGRNR+LQGLA A++KLWE
Sbjct: 372 TAPHFALGRNRELQGLARAMVKLWE 396


>Glyma17g06210.2 
          Length = 692

 Score =  170 bits (431), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 91/205 (44%), Positives = 120/205 (58%), Gaps = 34/205 (16%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMXXXXX 60
           MK+ H +LE K GG+V+WRSGS I+LYRG  YK P      +   + +  A+++      
Sbjct: 224 MKKAHQILESKIGGIVIWRSGSSIVLYRGMAYKLP-----CIENYKKVNLAKENA----- 273

Query: 61  XXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAE--DADSL 118
                       +  ++ G+ S  +      ++ +            E EL E  D + L
Sbjct: 274 -----------VDHSLHVGNGSDGQAKSAEYLKDMS-----------EEELMEMCDLNHL 311

Query: 119 LVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRP 178
           L  LGPRF DW G +PLPVDADLLPAVVPGY+ PFRLLPY ++P LT+ EMT  RRL+R 
Sbjct: 312 LDELGPRFKDWTGRQPLPVDADLLPAVVPGYKTPFRLLPYRIRPCLTNKEMTNFRRLART 371

Query: 179 IPSHFALGRNRKLQGLAAAIIKLWE 203
              HFALGRNR+LQGLA A++KLWE
Sbjct: 372 TAPHFALGRNRELQGLARAMVKLWE 396


>Glyma10g32920.1 
          Length = 577

 Score =  170 bits (431), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 93/203 (45%), Positives = 123/203 (60%), Gaps = 14/203 (6%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMXXXXX 60
           MKR H++LERKTGGLV+WRSG+ + LYRG  Y+ P     +V +++ I    ++      
Sbjct: 261 MKRMHEILERKTGGLVIWRSGNSVSLYRGVSYEAP-----SVQQNKKIYRKSKNSSKLLP 315

Query: 61  XXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLLV 120
                  +S           +S S TS P         NK +  LP +     + D LL 
Sbjct: 316 TPSYSVGNSPNA--------ASTSGTSAPLANLESTNDNKEKDYLP-KVNYEHEVDKLLD 366

Query: 121 GLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPIP 180
           GLGPR+TDW G  PLPVDAD+LPA VPGY+ PFR+LP+GV+  L   E T+LRR++R +P
Sbjct: 367 GLGPRYTDWPGCNPLPVDADMLPATVPGYQPPFRVLPFGVRATLGLREATSLRRIARTLP 426

Query: 181 SHFALGRNRKLQGLAAAIIKLWE 203
            HFALGRNR++QGLA A+ KLWE
Sbjct: 427 PHFALGRNRQVQGLAVAMTKLWE 449


>Glyma20g34730.1 
          Length = 692

 Score =  170 bits (431), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 96/203 (47%), Positives = 125/203 (61%), Gaps = 13/203 (6%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMXXXXX 60
           MKR H++LERKTGGLV+WRSG+ + LYRG  Y+ P     +V +++ I    ++      
Sbjct: 210 MKRMHEILERKTGGLVIWRSGNSVSLYRGVSYEVP-----SVQQNKKIYRKSEN---SSK 261

Query: 61  XXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLLV 120
                  +S    S+I    +S S TS P          K R  LP +     + D LL 
Sbjct: 262 LLPTPSYNSVGNPSDI----ASNSGTSAPLAKLESTNDEKERDYLP-KVNYEHEVDKLLD 316

Query: 121 GLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPIP 180
           GLGPR+TDW G +PLPVDAD+LP  VPGY+ PFR+LP+GV+  L   E T LRR++R +P
Sbjct: 317 GLGPRYTDWPGCDPLPVDADMLPVTVPGYQPPFRVLPFGVRATLGLREATALRRIARTLP 376

Query: 181 SHFALGRNRKLQGLAAAIIKLWE 203
            HFALGRNR+LQGLA A+IKLWE
Sbjct: 377 PHFALGRNRQLQGLAVAMIKLWE 399


>Glyma07g10270.1 
          Length = 781

 Score =  161 bits (407), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 88/204 (43%), Positives = 118/204 (57%), Gaps = 25/204 (12%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMXXXXX 60
           M++ H+++ER+TGGLV WRSGS +++YRG DY+ P    +    +E  GD    +     
Sbjct: 240 MRKAHEIVERRTGGLVTWRSGSVMMVYRGIDYQGPDSQKEV---NEKKGDG-FFVPDVSK 295

Query: 61  XXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLLV 120
                   S+   SE+      + +    A                 EAE     ++LL 
Sbjct: 296 REDSSTATSTSEKSEVVVREREHPENMSEA-----------------EAEY----NALLD 334

Query: 121 GLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPIP 180
           GLGPRF  WWG   LPVDADLLP  VPGY+ PFRLLP G++ +LT+ EMT LR+L++ +P
Sbjct: 335 GLGPRFVGWWGTGILPVDADLLPRTVPGYKTPFRLLPTGMRSRLTNAEMTNLRKLAKSLP 394

Query: 181 SHFALGRNRKLQGLAAAIIKLWER 204
            HFALGRNR  QGLA AI+KLWE+
Sbjct: 395 CHFALGRNRNHQGLACAILKLWEK 418


>Glyma09g31620.1 
          Length = 740

 Score =  159 bits (402), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/204 (42%), Positives = 117/204 (57%), Gaps = 26/204 (12%)

Query: 1   MKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDTVSRDEHIGDAEQHMXXXXX 60
           M++ H+++ER+TGGLV WRSGS +++YRG DY+ P    +    +E  GD          
Sbjct: 215 MRKAHEIVERRTGGLVTWRSGSVMMVYRGIDYQGPDSRKEL---NEKKGDG--FFVPDVS 269

Query: 61  XXXXXXXHSSETNSEIYAGHSSYSKTSKPALIQGVGTPNKVRFQLPGEAELAEDADSLLV 120
                   S+   SE+      + +    A                 EAE     ++LL 
Sbjct: 270 KREDSTATSTSEKSEVVVREREHPENMSEA-----------------EAEY----NALLD 308

Query: 121 GLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPIP 180
           GLGPRF  WWG   LPVDADLLP  VPGY+ PFRLLP G++ +LT+ EMT LR+L++ +P
Sbjct: 309 GLGPRFFGWWGTGILPVDADLLPRTVPGYKTPFRLLPTGMRSRLTNAEMTNLRKLAKSLP 368

Query: 181 SHFALGRNRKLQGLAAAIIKLWER 204
            HFA+GRNR  QGLA AI+KLWE+
Sbjct: 369 CHFAVGRNRNHQGLACAILKLWEK 392


>Glyma08g04630.1 
          Length = 574

 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 58/99 (58%), Positives = 77/99 (77%), Gaps = 4/99 (4%)

Query: 106 PGEAELAEDADSLLVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLT 165
           P EAE     + +L G GPRF +WWG   LPVDAD LP +VPGY+ P RLLP G++P+LT
Sbjct: 130 PEEAEF----NRMLDGFGPRFVEWWGTGILPVDADSLPPMVPGYKTPLRLLPAGMRPQLT 185

Query: 166 DDEMTTLRRLSRPIPSHFALGRNRKLQGLAAAIIKLWER 204
           +DE+T +R+L++ +P HFALGRNR LQGLA+AI++LWE+
Sbjct: 186 NDELTNMRKLAKSLPCHFALGRNRNLQGLASAILRLWEK 224


>Glyma02g09730.1 
          Length = 753

 Score =  118 bits (295), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 52/91 (57%), Positives = 68/91 (74%)

Query: 114 DADSLLVGLGPRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLR 173
           + + LL GL PRF DWW ++PLPVDADLLP  VP ++ PFRL P     K T  E+T  R
Sbjct: 258 ETNRLLDGLRPRFIDWWMHKPLPVDADLLPVEVPRFQPPFRLCPPHSSAKQTAYELTYFR 317

Query: 174 RLSRPIPSHFALGRNRKLQGLAAAIIKLWER 204
           +L++P+P+HF LGRN+ L+GLAAAI+KLWE+
Sbjct: 318 KLAQPLPTHFVLGRNKGLKGLAAAILKLWEK 348


>Glyma15g43130.1 
          Length = 73

 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 45/71 (63%), Gaps = 10/71 (14%)

Query: 133 EPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPIPSHFALGRNRKLQ 192
           +PLPVDA LLP      R+P           LT+ EMT  RRL+R    HFALGRNR+LQ
Sbjct: 2   QPLPVDAYLLPDTSSLSRRPC----------LTNKEMTNFRRLARTTAPHFALGRNRELQ 51

Query: 193 GLAAAIIKLWE 203
           GLA A++KLWE
Sbjct: 52  GLARAMVKLWE 62


>Glyma19g02630.1 
          Length = 68

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 48/83 (57%), Gaps = 20/83 (24%)

Query: 124 PRFTDWWGYEPLPVDADLLPAVVPGYRKPFRLLPYGVKPKLTDDEMTTLRRLSRPIPSHF 183
           PRF DW  ++PLPVDADLLP VVPGY  P       + P L   +M    R       ++
Sbjct: 1   PRFKDWTSHQPLPVDADLLPVVVPGYETP-------LCPCL---QMFLSNR-------YY 43

Query: 184 AL---GRNRKLQGLAAAIIKLWE 203
            L   GRNR+LQGLA A++K WE
Sbjct: 44  LLANAGRNRELQGLARAMVKRWE 66