Miyakogusa Predicted Gene

Lj2g3v1022600.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1022600.3 tr|B9IJP9|B9IJP9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_577541 PE=4
SV=1,50.51,0.000000000000005,seg,NULL,CUFF.35985.3
         (119 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g04580.1                                                        52   2e-07
Glyma02g02980.2                                                        51   2e-07

>Glyma01g04580.1 
          Length = 108

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 32/49 (65%)

Query: 71  KHLKLVGMQRHALHSNSGMIFVSKRRVPNGPDPIHNRKAVKYRQPPTQA 119
           KH ++VG  +    +     ++SKRRVPNGPDPIHNR+A    +PP QA
Sbjct: 60  KHERVVGRDKPVDRAELDFNYMSKRRVPNGPDPIHNRRAGNSGRPPGQA 108


>Glyma02g02980.2 
          Length = 102

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 32/49 (65%)

Query: 71  KHLKLVGMQRHALHSNSGMIFVSKRRVPNGPDPIHNRKAVKYRQPPTQA 119
           KH ++VG  +    +     ++SKRRVPNGPDPIHNR+A    +PP QA
Sbjct: 54  KHERVVGRDKPVDSAELDFNYMSKRRVPNGPDPIHNRRAGNSGRPPGQA 102