Miyakogusa Predicted Gene

Lj2g3v1020050.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1020050.1 tr|Q4S7G7|Q4S7G7_TETNG DNA-directed RNA
polymerase (Fragment) OS=Tetraodon nigroviridis
GN=GSTENG000,65.71,2e-19,beta and beta-prime subunits of DNA dependent
RNA-polymerase,NULL; no description,NULL; RNA_pol_Rpb2,CUFF.35947.1
         (82 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g14980.1                                                       137   2e-33
Glyma01g00980.1                                                       125   1e-29
Glyma15g18790.1                                                        59   1e-09
Glyma09g07570.1                                                        59   1e-09
Glyma15g08000.1                                                        55   1e-08

>Glyma07g14980.1 
          Length = 709

 Score =  137 bits (345), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/81 (77%), Positives = 67/81 (82%)

Query: 1   MLCACDTPEGEACGLVKNLALMTHVTTNEEEAPLISLCYCLGVEDMEVLSGEELHAPDSF 60
           MLC CDTPEGE+CGLVKNLALMTHVTT+EEE PLISLC  LGVEDM+ LS EELH PDSF
Sbjct: 137 MLCPCDTPEGESCGLVKNLALMTHVTTDEEEKPLISLCESLGVEDMKDLSAEELHTPDSF 196

Query: 61  LVIFYGLILGKHTEPQKFEAS 81
           LVIF GLILGKH  P  F  +
Sbjct: 197 LVIFNGLILGKHRRPLHFATA 217


>Glyma01g00980.1 
          Length = 795

 Score =  125 bits (313), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/78 (75%), Positives = 62/78 (79%)

Query: 1   MLCACDTPEGEACGLVKNLALMTHVTTNEEEAPLISLCYCLGVEDMEVLSGEELHAPDSF 60
           MLC CDTPEGE+CGLVKNLALMTHVTT+EEE PLISL Y L V  +E L  EELH PDSF
Sbjct: 133 MLCPCDTPEGESCGLVKNLALMTHVTTDEEEKPLISLFYSLDVARIEHLFAEELHTPDSF 192

Query: 61  LVIFYGLILGKHTEPQKF 78
           LVIF GLILGKH  P  F
Sbjct: 193 LVIFNGLILGKHRRPLHF 210


>Glyma15g18790.1 
          Length = 1193

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 1   MLCACDTPEGEACGLVKNLALMTHVTTNEEEAPLISLCYCLGVEDMEVLSGEELHAPDSF 60
           M+C  +TPEG+ACGLVKNLALM ++T      P++      G E+ E +S   +  P + 
Sbjct: 514 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PQAT 571

Query: 61  LVIFYGLILGKHTEP 75
            +   G  +G H +P
Sbjct: 572 KIFVNGCWMGIHRDP 586


>Glyma09g07570.1 
          Length = 1192

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 1   MLCACDTPEGEACGLVKNLALMTHVTTNEEEAPLISLCYCLGVEDMEVLSGEELHAPDSF 60
           M+C  +TPEG+ACGLVKNLALM ++T      P++      G E+ E +S   +  P + 
Sbjct: 514 MMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI--PQAT 571

Query: 61  LVIFYGLILGKHTEP 75
            +   G  +G H +P
Sbjct: 572 KIFVNGCWMGIHRDP 586


>Glyma15g08000.1 
          Length = 1070

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 1   MLCACDTPEGEACGLVKNLALMTHVTTNEEEAPLISLCYCLGVEDMEVLSGEELHA--PD 58
           M+C  +TPEG+ACGL+KNLALM  +T    E P++ L        M +L  E   A  P 
Sbjct: 491 MICPAETPEGQACGLMKNLALMVCITVGSAENPILEL--------MAILHKEISPAVIPQ 542

Query: 59  SFLVIFYGLILGKHTEPQKF 78
           +  V   G  +G H +P K 
Sbjct: 543 ATKVFVNGCWMGIHRDPDKL 562