Miyakogusa Predicted Gene

Lj2g3v1019870.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1019870.2 Non Chatacterized Hit- tr|I1J5K0|I1J5K0_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max PE=4,84.62,9e-18,GB
DEF: T7N9.12,NULL; REGULATOR OF CHROMOSOME CONDENSATION,NULL;
RCC1/BLIP-II,Regulator of chromosom,CUFF.35937.2
         (96 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g02650.1                                                       103   6e-23
Glyma01g04870.1                                                        95   2e-20

>Glyma02g02650.1 
          Length = 414

 Score =  103 bits (256), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/58 (81%), Positives = 53/58 (91%)

Query: 39  SENGEVKTWGWGEHGQLGLGDTCDRISPDTVSLGYDLNEAASIRVYYGSGFTFALTMP 96
           +E+GE+KTWGWGEHGQLGLGDT D+ SP TVSL YDLNEAASIRV+ GSGFTFA+TMP
Sbjct: 357 TEHGEIKTWGWGEHGQLGLGDTRDQTSPVTVSLDYDLNEAASIRVFCGSGFTFAVTMP 414


>Glyma01g04870.1 
          Length = 375

 Score = 95.1 bits (235), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/52 (84%), Positives = 48/52 (92%)

Query: 41  NGEVKTWGWGEHGQLGLGDTCDRISPDTVSLGYDLNEAASIRVYYGSGFTFA 92
           +GE+KTWGWGEHGQLGLGDT DRISP TVSLGYDLNEAAS+ V+ GSGFTFA
Sbjct: 324 HGEIKTWGWGEHGQLGLGDTRDRISPVTVSLGYDLNEAASVIVFCGSGFTFA 375