Miyakogusa Predicted Gene
- Lj2g3v0918390.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0918390.1 tr|I1N5M3|I1N5M3_SOYBN Elongation factor Ts,
mitochondrial OS=Glycine max GN=Gma.57273 PE=3
SV=1,76.15,0,EF_Ts,Translation elongation factor EFTs/EF1B; seg,NULL;
EF_TS,Translation elongation factor EFTs/EF,CUFF.35753.1
(353 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma19g00800.1 513 e-145
Glyma05g09250.1 170 3e-42
Glyma01g34700.1 86 9e-17
Glyma09g32600.1 84 3e-16
>Glyma19g00800.1
Length = 349
Score = 513 bits (1321), Expect = e-145, Method: Compositional matrix adjust.
Identities = 257/348 (73%), Positives = 293/348 (84%), Gaps = 12/348 (3%)
Query: 18 ATYG---RQC----HHYSSSASNEMNLVKQLRERTSAPIKDVKAALVDSNWDIEEAQKEL 70
A YG R C H+ S+SAS ++NL+KQLRERTSA +KDVKAALVDSNWDIEEAQKEL
Sbjct: 2 AFYGGAKRVCVSIRHYCSNSASEKVNLIKQLRERTSAAMKDVKAALVDSNWDIEEAQKEL 61
Query: 71 RKRGKVLASKKSSRTASEGLLALAHDRTRAALVELNCETDFVARNEIFQH-----XXXXX 125
RKRGKVLASKKSSRTAS+GLLALA T+ AL+ELNCETDFVARN+IFQH
Sbjct: 62 RKRGKVLASKKSSRTASQGLLALAQSPTKLALIELNCETDFVARNDIFQHLALRLANQAL 121
Query: 126 XXXXXXXENSSDAPFHFGPQSLEEMRLDLQHPKISGETTVHNAITEVAAIMGENVKLRRG 185
+SS + FH GPQSL++M +L HPK +G+TTVHNAITE+AA+MGENV+LRRG
Sbjct: 122 SLSLDSSSSSSSSSFHLGPQSLQDMPFNLDHPKFNGQTTVHNAITELAAMMGENVRLRRG 181
Query: 186 FVMPASSQGLISTYLHTSPQPGLGRIAGILSLEVDNGNTRVDALQRVGSELAMHVVAAKP 245
+V+PAS G ISTYLHTSPQPGLGRIAGILSL+VD+G T++ ALQRVGSELAMHVVAAKP
Sbjct: 182 YVIPASPNGFISTYLHTSPQPGLGRIAGILSLQVDDGQTQLQALQRVGSELAMHVVAAKP 241
Query: 246 LFLTKELVSSEALENEREVLKSQAEASGKPQMAINKMVEGRLRKYFEEVVLMEQKFILND 305
LFLTKELV S+ALENERE+LKSQAEASGKP+MAI KMVEGRLRKYFE+VV M+QKFI+ND
Sbjct: 242 LFLTKELVPSDALENEREILKSQAEASGKPKMAIEKMVEGRLRKYFEDVVFMDQKFIMND 301
Query: 306 ALNVKTVLDNLSKEVGSSVRIGSFLRMEVGEGIASQEADSSESVAQVA 353
+NVK VLDNLSKEVGSSVR+ FLRMEVGEGIA QE D+SE+VAQVA
Sbjct: 302 TMNVKAVLDNLSKEVGSSVRVVDFLRMEVGEGIARQETDTSETVAQVA 349
>Glyma05g09250.1
Length = 104
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/104 (80%), Positives = 93/104 (89%), Gaps = 2/104 (1%)
Query: 207 GLGRIAGILSLEVDNGNTRVDALQRVGSELAMHVVAAKPLFLTKELVSSEALENEREVLK 266
GLGRIAGILSL+VD+G T+V+AL RVGSE AMHVVAAKPLFLTKELV S+ALENERE+LK
Sbjct: 1 GLGRIAGILSLQVDDGQTQVEALHRVGSESAMHVVAAKPLFLTKELVPSDALENEREILK 60
Query: 267 SQ--AEASGKPQMAINKMVEGRLRKYFEEVVLMEQKFILNDALN 308
SQ AEASGKPQMAI KMVEGRLRKYFE V M+QKFI+ND +N
Sbjct: 61 SQFLAEASGKPQMAIEKMVEGRLRKYFENAVFMDQKFIMNDTMN 104
>Glyma01g34700.1
Length = 1133
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 17 AATYGRQCHHYSSSASNEMNLVKQLRERTSAPIKDVKAALVDSNWDIEEAQKELRKRGKV 76
A ++ S+ + +LVKQLRE T A + D K AL ++ D+E+AQ+ LRK+G
Sbjct: 913 AVPEAKETEPKQSTVAVSASLVKQLREETGAGMMDCKKALAETGGDLEKAQEYLRKKGLS 972
Query: 77 LASKKSSRTASEGLL-ALAHDRTRAALVELNCETDFVARNEIFQH 120
A KKSSR A+EG + + HD L+E+NCETDFV R E F+
Sbjct: 973 TADKKSSRLAAEGRIGSYIHDSRIGVLIEVNCETDFVGRGEKFKE 1017
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 37 LVKQLRERTSAPIKDVKAALVDSNWDIEEAQKELRKRGKVLASKKSSRTASEGLL-ALAH 95
LVKQLRE T A + D K AL ++ DI +AQ+ LRK+G A KK+SR +EG + + H
Sbjct: 692 LVKQLREETGAGMMDCKKALSETGGDIIKAQEYLRKKGLSSADKKASRVTAEGRIGSYIH 751
Query: 96 DRTRAALVELNCETDFVARNEIFQH 120
D LVE+NCETDFV+R EIF+
Sbjct: 752 DSRIGVLVEVNCETDFVSRGEIFKE 776
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 84/156 (53%), Gaps = 8/156 (5%)
Query: 191 SSQGLISTYLHTSPQPGLGRIAGILSLEVDNG-NTRVDALQRVGSELAMHVVAAKPL-FL 248
+++G I +Y+H S RI ++ + + +R + + + ++AM V A + +L
Sbjct: 741 TAEGRIGSYIHDS------RIGVLVEVNCETDFVSRGEIFKELVDDIAMQVAACPQVEYL 794
Query: 249 TKELVSSEALENEREVLKSQAEASGKPQMAINKMVEGRLRKYFEEVVLMEQKFILNDALN 308
E V E + E+E+ + + KP+ +K+VEGR+RK EE+ L+EQ +I +D +
Sbjct: 795 VTEDVPEEIVNKEKEIEMQKEDLLSKPEQIRSKIVEGRIRKRLEELALLEQSYIKDDKVA 854
Query: 309 VKTVLDNLSKEVGSSVRIGSFLRMEVGEGIASQEAD 344
VK + +G ++++ F+R +GEG+ + D
Sbjct: 855 VKDFIKQTIATIGENIKVKRFVRFNLGEGLEKKSQD 890
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 83/151 (54%), Gaps = 14/151 (9%)
Query: 191 SSQGLISTYLHTSPQPGLGRIAGILSLEVDNGNT----RVDALQRVGSELAMHVVAAKPL 246
+++G I +Y+H S RI G+L +EV N T R + + + +LAM VVA +
Sbjct: 982 AAEGRIGSYIHDS------RI-GVL-IEV-NCETDFVGRGEKFKELVDDLAMQVVACPQV 1032
Query: 247 -FLTKELVSSEALENEREVLKSQAEASGKPQMAINKMVEGRLRKYFEEVVLMEQKFILND 305
F++ E + + E+E+ + + KP+ K+VEGR+ K E+ L+EQ FI +D
Sbjct: 1033 QFVSIEDIPETIVNKEKELEMQREDLLSKPENIREKIVEGRILKRLGELALLEQPFIKDD 1092
Query: 306 ALNVKTVLDNLSKEVGSSVRIGSFLRMEVGE 336
++ VK ++ +G ++++ F+R +GE
Sbjct: 1093 SVLVKDLVKQTVAALGENIKVRRFVRFTLGE 1123
>Glyma09g32600.1
Length = 1135
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Query: 36 NLVKQLRERTSAPIKDVKAALVDSNWDIEEAQKELRKRGKVLASKKSSRTASEGLL-ALA 94
+LVKQLRE T A + D K AL ++ D+E+AQ+ LRK+G A KKSSR A+EG + +
Sbjct: 934 SLVKQLREETGAGMMDCKKALAETGGDLEKAQEYLRKKGLSSADKKSSRLAAEGRIGSYI 993
Query: 95 HDRTRAALVELNCETDFVARNEIFQH 120
HD L+E+NCETDFV R E F+
Sbjct: 994 HDSRIGVLIEVNCETDFVGRGEKFKE 1019
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 37 LVKQLRERTSAPIKDVKAALVDSNWDIEEAQKELRKRGKVLASKKSSRTASEGLL-ALAH 95
LVKQLRE T A + D K AL ++ DI +AQ+ LRK+G A KK+SR +EG + + H
Sbjct: 692 LVKQLREETGAGMMDCKNALSETGGDIIKAQEYLRKKGLSSADKKASRVTAEGRIGSYIH 751
Query: 96 DRTRAALVELNCETDFVARNEIFQH 120
D LVE+NCETDFV+R EIF+
Sbjct: 752 DSRIGVLVEVNCETDFVSRGEIFKE 776
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 84/156 (53%), Gaps = 8/156 (5%)
Query: 191 SSQGLISTYLHTSPQPGLGRIAGILSLEVDNG-NTRVDALQRVGSELAMHVVAAKPL-FL 248
+++G I +Y+H S RI ++ + + +R + + + ++AM V A + FL
Sbjct: 741 TAEGRIGSYIHDS------RIGVLVEVNCETDFVSRGEIFKELVDDIAMQVAACPQVEFL 794
Query: 249 TKELVSSEALENEREVLKSQAEASGKPQMAINKMVEGRLRKYFEEVVLMEQKFILNDALN 308
E V E + E+E+ + + KP+ +K+VEGR+RK EE+ L+EQ +I +D +
Sbjct: 795 VTEDVPEEIVNKEKEIEMQKEDLLSKPEQIRSKIVEGRIRKRLEELALLEQSYIKDDKVA 854
Query: 309 VKTVLDNLSKEVGSSVRIGSFLRMEVGEGIASQEAD 344
VK + +G ++++ F+R +GEG+ + D
Sbjct: 855 VKDFVKQTIATIGENIKVKRFVRFNLGEGLEKKSQD 890
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 83/151 (54%), Gaps = 14/151 (9%)
Query: 191 SSQGLISTYLHTSPQPGLGRIAGILSLEVDNGNT----RVDALQRVGSELAMHVVAAKPL 246
+++G I +Y+H S RI G+L +EV N T R + + + +LAM VVA +
Sbjct: 984 AAEGRIGSYIHDS------RI-GVL-IEV-NCETDFVGRGEKFKELVDDLAMQVVACPQV 1034
Query: 247 -FLTKELVSSEALENEREVLKSQAEASGKPQMAINKMVEGRLRKYFEEVVLMEQKFILND 305
F++ E + + E+E+ + + KP+ K+VEGR+ K E+ L+EQ FI +D
Sbjct: 1035 QFVSIEDIPETIVNKEKELEMQREDLLSKPENIREKIVEGRISKRLGELALLEQPFIKDD 1094
Query: 306 ALNVKTVLDNLSKEVGSSVRIGSFLRMEVGE 336
++ VK ++ +G ++++ F+R +GE
Sbjct: 1095 SVLVKDLVKQTVAALGENIKVRRFVRFTLGE 1125